miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27034 3' -56.8 NC_005832.1 + 12852 1.12 0.001011
Target:  5'- gACCUCCACGGCGAAACCCUCACUGCCa -3'
miRNA:   3'- -UGGAGGUGCCGCUUUGGGAGUGACGG- -5'
27034 3' -56.8 NC_005832.1 + 104107 0.8 0.155544
Target:  5'- gGCgUCCGCGGCG--GCCCUCAggGCCa -3'
miRNA:   3'- -UGgAGGUGCCGCuuUGGGAGUgaCGG- -5'
27034 3' -56.8 NC_005832.1 + 95566 0.78 0.200937
Target:  5'- aGCCUCCGCGGcCGcuGCCggugacuguCUCAUUGCCg -3'
miRNA:   3'- -UGGAGGUGCC-GCuuUGG---------GAGUGACGG- -5'
27034 3' -56.8 NC_005832.1 + 69433 0.77 0.227701
Target:  5'- gACCUCCugGGUGAAGCCaCUCug-GCUc -3'
miRNA:   3'- -UGGAGGugCCGCUUUGG-GAGugaCGG- -5'
27034 3' -56.8 NC_005832.1 + 7075 0.75 0.304257
Target:  5'- uCC-CCAUGGCGu--CCCUCACUGUg -3'
miRNA:   3'- uGGaGGUGCCGCuuuGGGAGUGACGg -5'
27034 3' -56.8 NC_005832.1 + 12024 0.75 0.311459
Target:  5'- gGCCcgCUAUGGgagaCGGAGCCCUCACcGCCg -3'
miRNA:   3'- -UGGa-GGUGCC----GCUUUGGGAGUGaCGG- -5'
27034 3' -56.8 NC_005832.1 + 28076 0.75 0.341554
Target:  5'- gGCCgUCUcCGGCGGGACCCUU--UGCCa -3'
miRNA:   3'- -UGG-AGGuGCCGCUUUGGGAGugACGG- -5'
27034 3' -56.8 NC_005832.1 + 102209 0.74 0.378688
Target:  5'- gGCCUCCAUGGCGGAcgguguuACCgUCuccugagccaugccGCUGCUc -3'
miRNA:   3'- -UGGAGGUGCCGCUU-------UGGgAG--------------UGACGG- -5'
27034 3' -56.8 NC_005832.1 + 1153 0.73 0.390516
Target:  5'- gGCCUCUAUauccaaGGCGA--UCCUCGCUGCg -3'
miRNA:   3'- -UGGAGGUG------CCGCUuuGGGAGUGACGg -5'
27034 3' -56.8 NC_005832.1 + 13304 0.73 0.407824
Target:  5'- uGCCgUCCACGGCGAuGgUCUUGCcgGCCa -3'
miRNA:   3'- -UGG-AGGUGCCGCUuUgGGAGUGa-CGG- -5'
27034 3' -56.8 NC_005832.1 + 94678 0.72 0.440158
Target:  5'- aGCCUCCG-GGCGGGACCCUCuuaACaaggauguuguggGCCu -3'
miRNA:   3'- -UGGAGGUgCCGCUUUGGGAG---UGa------------CGG- -5'
27034 3' -56.8 NC_005832.1 + 89252 0.72 0.481576
Target:  5'- gGCUcCCACGGCGu-ACCCUgGCcaGCCg -3'
miRNA:   3'- -UGGaGGUGCCGCuuUGGGAgUGa-CGG- -5'
27034 3' -56.8 NC_005832.1 + 86319 0.72 0.491253
Target:  5'- aGCCUCCucaGGCGGcuGCuCCUCuuGCUGCUg -3'
miRNA:   3'- -UGGAGGug-CCGCUu-UG-GGAG--UGACGG- -5'
27034 3' -56.8 NC_005832.1 + 93746 0.71 0.520801
Target:  5'- cCCUCCACGcCGGAGCCCugagcaugaUCGCUcCCg -3'
miRNA:   3'- uGGAGGUGCcGCUUUGGG---------AGUGAcGG- -5'
27034 3' -56.8 NC_005832.1 + 1725 0.7 0.551017
Target:  5'- uGCCUCCA--GC-AGGCCCUCAUgGCCa -3'
miRNA:   3'- -UGGAGGUgcCGcUUUGGGAGUGaCGG- -5'
27034 3' -56.8 NC_005832.1 + 94999 0.7 0.551017
Target:  5'- cACCUCaUugGGCacGGAACCC--GCUGCCc -3'
miRNA:   3'- -UGGAG-GugCCG--CUUUGGGagUGACGG- -5'
27034 3' -56.8 NC_005832.1 + 11795 0.7 0.561211
Target:  5'- cGCCUUCAagGGUGAAgguGCCCUgGCUcugGCCg -3'
miRNA:   3'- -UGGAGGUg-CCGCUU---UGGGAgUGA---CGG- -5'
27034 3' -56.8 NC_005832.1 + 9620 0.7 0.571457
Target:  5'- gGCCagggCCgACGGCaAGACCCUCAacGCCg -3'
miRNA:   3'- -UGGa---GG-UGCCGcUUUGGGAGUgaCGG- -5'
27034 3' -56.8 NC_005832.1 + 86265 0.7 0.571457
Target:  5'- aGCCUCCuuaGGCu--GCUCUUGCUGCUg -3'
miRNA:   3'- -UGGAGGug-CCGcuuUGGGAGUGACGG- -5'
27034 3' -56.8 NC_005832.1 + 25295 0.7 0.571457
Target:  5'- cCCUCCAgGGaGAAAUCCUC--UGCCu -3'
miRNA:   3'- uGGAGGUgCCgCUUUGGGAGugACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.