miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27034 3' -56.8 NC_005832.1 + 90602 0.68 0.7059
Target:  5'- aGCCUcuuuaCCAUGGCGucGAGCaCCUCAgaGUCu -3'
miRNA:   3'- -UGGA-----GGUGCCGC--UUUG-GGAGUgaCGG- -5'
27034 3' -56.8 NC_005832.1 + 47392 0.69 0.644009
Target:  5'- gAUgUCUGCGGCGGugacggGAUCCUUguuGCUGCCc -3'
miRNA:   3'- -UGgAGGUGCCGCU------UUGGGAG---UGACGG- -5'
27034 3' -56.8 NC_005832.1 + 53973 0.69 0.644009
Target:  5'- cCCUCCcggcuuCGGCaAGACCUUCAUgGCCc -3'
miRNA:   3'- uGGAGGu-----GCCGcUUUGGGAGUGaCGG- -5'
27034 3' -56.8 NC_005832.1 + 66404 0.69 0.6544
Target:  5'- gGCCUcCCugGGaUGGGACUUgggagaCGCUGCCg -3'
miRNA:   3'- -UGGA-GGugCC-GCUUUGGGa-----GUGACGG- -5'
27034 3' -56.8 NC_005832.1 + 78674 0.69 0.663737
Target:  5'- cGCC-CCAgaguggcCGGCGcAGACCgCUCAC-GCCa -3'
miRNA:   3'- -UGGaGGU-------GCCGC-UUUGG-GAGUGaCGG- -5'
27034 3' -56.8 NC_005832.1 + 56401 0.68 0.685428
Target:  5'- cCCUCCugcCGGCcaGGAACCC-CACUcCCa -3'
miRNA:   3'- uGGAGGu--GCCG--CUUUGGGaGUGAcGG- -5'
27034 3' -56.8 NC_005832.1 + 81263 0.68 0.7059
Target:  5'- cACCugggagUCUGCGGCuuucgcAGCCCUCACUuggGCCa -3'
miRNA:   3'- -UGG------AGGUGCCGcu----UUGGGAGUGA---CGG- -5'
27034 3' -56.8 NC_005832.1 + 78816 0.68 0.7059
Target:  5'- uACC-CCGCGGUGAuuACCUUCGacgUGCUc -3'
miRNA:   3'- -UGGaGGUGCCGCUu-UGGGAGUg--ACGG- -5'
27034 3' -56.8 NC_005832.1 + 26937 0.68 0.7059
Target:  5'- uGCCUCUGCaaGCGugcACCCUC-CUGCUc -3'
miRNA:   3'- -UGGAGGUGc-CGCuu-UGGGAGuGACGG- -5'
27034 3' -56.8 NC_005832.1 + 67257 0.69 0.623206
Target:  5'- uGCCUCUcuaccCGGUGAGGCUgUgGCUGUCg -3'
miRNA:   3'- -UGGAGGu----GCCGCUUUGGgAgUGACGG- -5'
27034 3' -56.8 NC_005832.1 + 28993 0.69 0.612811
Target:  5'- aGCUaagCCugGGUuccgucaGAGCCCUCGCUGCg -3'
miRNA:   3'- -UGGa--GGugCCGc------UUUGGGAGUGACGg -5'
27034 3' -56.8 NC_005832.1 + 86265 0.7 0.571457
Target:  5'- aGCCUCCuuaGGCu--GCUCUUGCUGCUg -3'
miRNA:   3'- -UGGAGGug-CCGcuuUGGGAGUGACGG- -5'
27034 3' -56.8 NC_005832.1 + 1153 0.73 0.390516
Target:  5'- gGCCUCUAUauccaaGGCGA--UCCUCGCUGCg -3'
miRNA:   3'- -UGGAGGUG------CCGCUuuGGGAGUGACGg -5'
27034 3' -56.8 NC_005832.1 + 13304 0.73 0.407824
Target:  5'- uGCCgUCCACGGCGAuGgUCUUGCcgGCCa -3'
miRNA:   3'- -UGG-AGGUGCCGCUuUgGGAGUGa-CGG- -5'
27034 3' -56.8 NC_005832.1 + 94678 0.72 0.440158
Target:  5'- aGCCUCCG-GGCGGGACCCUCuuaACaaggauguuguggGCCu -3'
miRNA:   3'- -UGGAGGUgCCGCUUUGGGAG---UGa------------CGG- -5'
27034 3' -56.8 NC_005832.1 + 89252 0.72 0.481576
Target:  5'- gGCUcCCACGGCGu-ACCCUgGCcaGCCg -3'
miRNA:   3'- -UGGaGGUGCCGCuuUGGGAgUGa-CGG- -5'
27034 3' -56.8 NC_005832.1 + 86319 0.72 0.491253
Target:  5'- aGCCUCCucaGGCGGcuGCuCCUCuuGCUGCUg -3'
miRNA:   3'- -UGGAGGug-CCGCUu-UG-GGAG--UGACGG- -5'
27034 3' -56.8 NC_005832.1 + 94999 0.7 0.551017
Target:  5'- cACCUCaUugGGCacGGAACCC--GCUGCCc -3'
miRNA:   3'- -UGGAG-GugCCG--CUUUGGGagUGACGG- -5'
27034 3' -56.8 NC_005832.1 + 11795 0.7 0.561211
Target:  5'- cGCCUUCAagGGUGAAgguGCCCUgGCUcugGCCg -3'
miRNA:   3'- -UGGAGGUg-CCGCUU---UGGGAgUGA---CGG- -5'
27034 3' -56.8 NC_005832.1 + 25295 0.7 0.571457
Target:  5'- cCCUCCAgGGaGAAAUCCUC--UGCCu -3'
miRNA:   3'- uGGAGGUgCCgCUUUGGGAGugACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.