miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27034 3' -56.8 NC_005832.1 + 1153 0.73 0.390516
Target:  5'- gGCCUCUAUauccaaGGCGA--UCCUCGCUGCg -3'
miRNA:   3'- -UGGAGGUG------CCGCUuuGGGAGUGACGg -5'
27034 3' -56.8 NC_005832.1 + 1457 0.66 0.793722
Target:  5'- cACCUCa--GGUGGAACUCUCugUcCCc -3'
miRNA:   3'- -UGGAGgugCCGCUUUGGGAGugAcGG- -5'
27034 3' -56.8 NC_005832.1 + 1725 0.7 0.551017
Target:  5'- uGCCUCCA--GC-AGGCCCUCAUgGCCa -3'
miRNA:   3'- -UGGAGGUgcCGcUUUGGGAGUGaCGG- -5'
27034 3' -56.8 NC_005832.1 + 2138 0.68 0.716045
Target:  5'- gGCCcCCAuauuCGGCGAGGCCCUgucgguggaCACgagggacGCCa -3'
miRNA:   3'- -UGGaGGU----GCCGCUUUGGGA---------GUGa------CGG- -5'
27034 3' -56.8 NC_005832.1 + 5167 0.69 0.627366
Target:  5'- aGCCUCCugGgGUGGAACCUgacgugagaucccuuUCccCUGCCc -3'
miRNA:   3'- -UGGAGGugC-CGCUUUGGG---------------AGu-GACGG- -5'
27034 3' -56.8 NC_005832.1 + 5332 0.66 0.784441
Target:  5'- cCCUCgACGGCGGggUCgUCG-UGCUc -3'
miRNA:   3'- uGGAGgUGCCGCUuuGGgAGUgACGG- -5'
27034 3' -56.8 NC_005832.1 + 6804 0.66 0.829253
Target:  5'- uAUCUCCuuaccCGGCcucGACCCUCccacguACUGCUg -3'
miRNA:   3'- -UGGAGGu----GCCGcu-UUGGGAG------UGACGG- -5'
27034 3' -56.8 NC_005832.1 + 7075 0.75 0.304257
Target:  5'- uCC-CCAUGGCGu--CCCUCACUGUg -3'
miRNA:   3'- uGGaGGUGCCGCuuuGGGAGUGACGg -5'
27034 3' -56.8 NC_005832.1 + 7595 0.68 0.675119
Target:  5'- cACCUUCAgCGGC---ACCacgCACUGCCu -3'
miRNA:   3'- -UGGAGGU-GCCGcuuUGGga-GUGACGG- -5'
27034 3' -56.8 NC_005832.1 + 9620 0.7 0.571457
Target:  5'- gGCCagggCCgACGGCaAGACCCUCAacGCCg -3'
miRNA:   3'- -UGGa---GG-UGCCGcUUUGGGAGUgaCGG- -5'
27034 3' -56.8 NC_005832.1 + 9899 0.67 0.726115
Target:  5'- gGCCUCCGCGGCcGAcgcGCCCgacgaaGCggGCa -3'
miRNA:   3'- -UGGAGGUGCCG-CUu--UGGGag----UGa-CGg -5'
27034 3' -56.8 NC_005832.1 + 10679 0.67 0.745995
Target:  5'- cACCUCCugucCGGCauGACCgCcagggagCACUGCCu -3'
miRNA:   3'- -UGGAGGu---GCCGcuUUGG-Ga------GUGACGG- -5'
27034 3' -56.8 NC_005832.1 + 11795 0.7 0.561211
Target:  5'- cGCCUUCAagGGUGAAgguGCCCUgGCUcugGCCg -3'
miRNA:   3'- -UGGAGGUg-CCGCUU---UGGGAgUGA---CGG- -5'
27034 3' -56.8 NC_005832.1 + 12024 0.75 0.311459
Target:  5'- gGCCcgCUAUGGgagaCGGAGCCCUCACcGCCg -3'
miRNA:   3'- -UGGa-GGUGCC----GCUUUGGGAGUGaCGG- -5'
27034 3' -56.8 NC_005832.1 + 12353 0.67 0.726115
Target:  5'- cUCUUCAUaGCGu--CCCUCAgCUGCCa -3'
miRNA:   3'- uGGAGGUGcCGCuuuGGGAGU-GACGG- -5'
27034 3' -56.8 NC_005832.1 + 12852 1.12 0.001011
Target:  5'- gACCUCCACGGCGAAACCCUCACUGCCa -3'
miRNA:   3'- -UGGAGGUGCCGCUUUGGGAGUGACGG- -5'
27034 3' -56.8 NC_005832.1 + 12898 0.66 0.784441
Target:  5'- cGCCcUgGCGuGCGggGCCCUgCACgGCg -3'
miRNA:   3'- -UGGaGgUGC-CGCuuUGGGA-GUGaCGg -5'
27034 3' -56.8 NC_005832.1 + 13304 0.73 0.407824
Target:  5'- uGCCgUCCACGGCGAuGgUCUUGCcgGCCa -3'
miRNA:   3'- -UGG-AGGUGCCGCUuUgGGAGUGa-CGG- -5'
27034 3' -56.8 NC_005832.1 + 19731 0.69 0.612811
Target:  5'- cCCUCCuGCGGCGGGuuuCCCUCuuACgGCg -3'
miRNA:   3'- uGGAGG-UGCCGCUUu--GGGAG--UGaCGg -5'
27034 3' -56.8 NC_005832.1 + 21058 0.7 0.571457
Target:  5'- aGCCUCCuguacGCGGCGAuaaCCUCAgaGaCCc -3'
miRNA:   3'- -UGGAGG-----UGCCGCUuugGGAGUgaC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.