Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27035 | 3' | -57.2 | NC_005832.1 | + | 42516 | 0.7 | 0.574659 |
Target: 5'- gCGugcuGCUcCAUGAGGAGGgccgccaugCUCUGGugGu -3' miRNA: 3'- -GCu---CGA-GUACUCCUCCa--------GGGACCugC- -5' |
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27035 | 3' | -57.2 | NC_005832.1 | + | 79116 | 0.71 | 0.514248 |
Target: 5'- --cGCUUAcGAGGAGGUCCgUgaGGACGu -3' miRNA: 3'- gcuCGAGUaCUCCUCCAGGgA--CCUGC- -5' |
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27035 | 3' | -57.2 | NC_005832.1 | + | 12542 | 0.71 | 0.51129 |
Target: 5'- cCGAGCUCAUcAGGAGuguguuccucccgaGUUUCUGGACa -3' miRNA: 3'- -GCUCGAGUAcUCCUC--------------CAGGGACCUGc -5' |
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27035 | 3' | -57.2 | NC_005832.1 | + | 685 | 0.75 | 0.293477 |
Target: 5'- gGAGCUCGUGAGcaGGGuGUCCUcGGACGc -3' miRNA: 3'- gCUCGAGUACUC--CUC-CAGGGaCCUGC- -5' |
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27035 | 3' | -57.2 | NC_005832.1 | + | 13028 | 1.08 | 0.001701 |
Target: 5'- aCGAGCUCAUGAGGAGGUCCCUGGACGc -3' miRNA: 3'- -GCUCGAGUACUCCUCCAGGGACCUGC- -5' |
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27035 | 3' | -57.2 | NC_005832.1 | + | 39241 | 0.66 | 0.80465 |
Target: 5'- -aGGCUCGggaucGGGGAccgugaaccuggGGUCCC-GGACGg -3' miRNA: 3'- gcUCGAGUa----CUCCU------------CCAGGGaCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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