miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27035 5' -60.3 NC_005832.1 + 36406 0.69 0.481789
Target:  5'- gUCCauaguCGCAGAgGCCgCCG-CGAGGg -3'
miRNA:   3'- -GGGgau--GCGUCUgCGGgGGCuGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 36667 0.67 0.627314
Target:  5'- aCgCCaACGCccuGugGCCCCCGGCccuGGc -3'
miRNA:   3'- -GgGGaUGCGu--CugCGGGGGCUGcu-CC- -5'
27035 5' -60.3 NC_005832.1 + 39285 0.72 0.332116
Target:  5'- gCCCCgcggGCGCAGACGgaguccacguCCaCCUGGCGGGu -3'
miRNA:   3'- -GGGGa---UGCGUCUGC----------GG-GGGCUGCUCc -5'
27035 5' -60.3 NC_005832.1 + 39469 0.71 0.378052
Target:  5'- gCCCUGguCGCcGuCGUCCCCGGgGGGGg -3'
miRNA:   3'- gGGGAU--GCGuCuGCGGGGGCUgCUCC- -5'
27035 5' -60.3 NC_005832.1 + 40343 0.73 0.303843
Target:  5'- cUCCCUAuuUGCGGGCGCCauagCCCGGC-AGGa -3'
miRNA:   3'- -GGGGAU--GCGUCUGCGG----GGGCUGcUCC- -5'
27035 5' -60.3 NC_005832.1 + 42389 0.67 0.594484
Target:  5'- gCCCUccucauggagcagcACGCGucCGCCCCCGAgGAc- -3'
miRNA:   3'- gGGGA--------------UGCGUcuGCGGGGGCUgCUcc -5'
27035 5' -60.3 NC_005832.1 + 42426 0.66 0.657198
Target:  5'- aCCCCgugGCGGAucuggccaagcaCGUCCCUGACGgcAGGu -3'
miRNA:   3'- -GGGGaugCGUCU------------GCGGGGGCUGC--UCC- -5'
27035 5' -60.3 NC_005832.1 + 43058 0.67 0.637282
Target:  5'- gUCCCUACG-AGACGCCCgaGG-GAGa -3'
miRNA:   3'- -GGGGAUGCgUCUGCGGGggCUgCUCc -5'
27035 5' -60.3 NC_005832.1 + 43343 0.66 0.677038
Target:  5'- aCCCCgcaGCGcCGGAccaCGCCagCCUGGCGGGa -3'
miRNA:   3'- -GGGGa--UGC-GUCU---GCGG--GGGCUGCUCc -5'
27035 5' -60.3 NC_005832.1 + 44039 0.67 0.647246
Target:  5'- gUCCUguaggugACGCAGGaaaaaagGCCCCUGuccaACGAGGa -3'
miRNA:   3'- -GGGGa------UGCGUCUg------CGGGGGC----UGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 44053 0.71 0.378052
Target:  5'- aCCCguugUGCGCGGGgGCCCUCGucAgGAGGg -3'
miRNA:   3'- gGGG----AUGCGUCUgCGGGGGC--UgCUCC- -5'
27035 5' -60.3 NC_005832.1 + 47918 0.66 0.677038
Target:  5'- aCCCCgAgGCGGAgGUCCuggCCGA-GAGGg -3'
miRNA:   3'- -GGGGaUgCGUCUgCGGG---GGCUgCUCC- -5'
27035 5' -60.3 NC_005832.1 + 52929 0.71 0.419462
Target:  5'- gCCCCUGgGCAGcAUGgCCCCggGACGcaAGGg -3'
miRNA:   3'- -GGGGAUgCGUC-UGCgGGGG--CUGC--UCC- -5'
27035 5' -60.3 NC_005832.1 + 53935 0.71 0.410961
Target:  5'- aCCCCaggcgaaggggACGUAGGCcuuuCCCCCGggcGCGAGGg -3'
miRNA:   3'- -GGGGa----------UGCGUCUGc---GGGGGC---UGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 66047 0.73 0.317743
Target:  5'- gCCCUggACGCAcuACGUCCCCG-UGAGGg -3'
miRNA:   3'- gGGGA--UGCGUc-UGCGGGGGCuGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 67028 0.68 0.567823
Target:  5'- gCCCUG-GCGG-CGgCCgUGGCGAGGg -3'
miRNA:   3'- gGGGAUgCGUCuGCgGGgGCUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 72550 0.67 0.607396
Target:  5'- ----cGCGUAGACgGUCCCCGugGGGa -3'
miRNA:   3'- ggggaUGCGUCUG-CGGGGGCugCUCc -5'
27035 5' -60.3 NC_005832.1 + 72701 0.66 0.706516
Target:  5'- aCCCUgaaGCcCAGGgGCCCCaCGuccccACGGGGa -3'
miRNA:   3'- gGGGA---UGcGUCUgCGGGG-GC-----UGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 75486 0.67 0.647246
Target:  5'- uCCCCUuucgACGCacaucaugaAGACGUcggugauguuuaCCCCGugGuGGa -3'
miRNA:   3'- -GGGGA----UGCG---------UCUGCG------------GGGGCugCuCC- -5'
27035 5' -60.3 NC_005832.1 + 75982 0.69 0.519355
Target:  5'- aCCUCUugGCcGugGCCCCCaACGc-- -3'
miRNA:   3'- -GGGGAugCGuCugCGGGGGcUGCucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.