miRNA display CGI


Results 21 - 40 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27035 5' -60.3 NC_005832.1 + 12840 0.69 0.509849
Target:  5'- gCCUUACGCAGcacagcuCGgCCUCGuCGGGGg -3'
miRNA:   3'- gGGGAUGCGUCu------GCgGGGGCuGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 75982 0.69 0.519355
Target:  5'- aCCUCUugGCcGugGCCCCCaACGc-- -3'
miRNA:   3'- -GGGGAugCGuCugCGGGGGcUGCucc -5'
27035 5' -60.3 NC_005832.1 + 32967 0.69 0.525092
Target:  5'- uCUCCUGCcuucgGCAGACaccuccagccucuCCCCgGACGAGGc -3'
miRNA:   3'- -GGGGAUG-----CGUCUGc------------GGGGgCUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 32874 0.69 0.525092
Target:  5'- uCUCCUGCcucccGCAGACaccuccagccucuCCCCgGACGAGGc -3'
miRNA:   3'- -GGGGAUG-----CGUCUGc------------GGGGgCUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 9900 0.68 0.538569
Target:  5'- gCCUCcGCgGCcGACGCgCCCGACGAagcGGg -3'
miRNA:   3'- -GGGGaUG-CGuCUGCGgGGGCUGCU---CC- -5'
27035 5' -60.3 NC_005832.1 + 35704 0.68 0.548268
Target:  5'- cCCCCgcCGUGGGCGCCUCUG-CGucuAGGu -3'
miRNA:   3'- -GGGGauGCGUCUGCGGGGGCuGC---UCC- -5'
27035 5' -60.3 NC_005832.1 + 67028 0.68 0.567823
Target:  5'- gCCCUG-GCGG-CGgCCgUGGCGAGGg -3'
miRNA:   3'- gGGGAUgCGUCuGCgGGgGCUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 26493 0.68 0.567823
Target:  5'- aCCUggagacugACGgGGGCacggucaucGUCCCCGGCGAGGc -3'
miRNA:   3'- gGGGa-------UGCgUCUG---------CGGGGGCUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 30165 0.68 0.577667
Target:  5'- -gCUUGCGguG-CGCuCCCCuGCGAGGu -3'
miRNA:   3'- ggGGAUGCguCuGCG-GGGGcUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 80943 0.68 0.577667
Target:  5'- cCCCCUGuuUGCAGcgaaGCUCCUGACGGa- -3'
miRNA:   3'- -GGGGAU--GCGUCug--CGGGGGCUGCUcc -5'
27035 5' -60.3 NC_005832.1 + 42389 0.67 0.594484
Target:  5'- gCCCUccucauggagcagcACGCGucCGCCCCCGAgGAc- -3'
miRNA:   3'- gGGGA--------------UGCGUcuGCGGGGGCUgCUcc -5'
27035 5' -60.3 NC_005832.1 + 72550 0.67 0.607396
Target:  5'- ----cGCGUAGACgGUCCCCGugGGGa -3'
miRNA:   3'- ggggaUGCGUCUG-CGGGGGCugCUCc -5'
27035 5' -60.3 NC_005832.1 + 103522 0.67 0.61735
Target:  5'- uUCCCaaaAUGCAGaAUGCaCCCagaGACGGGGc -3'
miRNA:   3'- -GGGGa--UGCGUC-UGCG-GGGg--CUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 8116 0.67 0.61735
Target:  5'- aCCCCUGaGCAgGGCgGCCUUCGAgGAGu -3'
miRNA:   3'- -GGGGAUgCGU-CUG-CGGGGGCUgCUCc -5'
27035 5' -60.3 NC_005832.1 + 36667 0.67 0.627314
Target:  5'- aCgCCaACGCccuGugGCCCCCGGCccuGGc -3'
miRNA:   3'- -GgGGaUGCGu--CugCGGGGGCUGcu-CC- -5'
27035 5' -60.3 NC_005832.1 + 43058 0.67 0.637282
Target:  5'- gUCCCUACG-AGACGCCCgaGG-GAGa -3'
miRNA:   3'- -GGGGAUGCgUCUGCGGGggCUgCUCc -5'
27035 5' -60.3 NC_005832.1 + 44039 0.67 0.647246
Target:  5'- gUCCUguaggugACGCAGGaaaaaagGCCCCUGuccaACGAGGa -3'
miRNA:   3'- -GGGGa------UGCGUCUg------CGGGGGC----UGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 75486 0.67 0.647246
Target:  5'- uCCCCUuucgACGCacaucaugaAGACGUcggugauguuuaCCCCGugGuGGa -3'
miRNA:   3'- -GGGGA----UGCG---------UCUGCG------------GGGGCugCuCC- -5'
27035 5' -60.3 NC_005832.1 + 42426 0.66 0.657198
Target:  5'- aCCCCgugGCGGAucuggccaagcaCGUCCCUGACGgcAGGu -3'
miRNA:   3'- -GGGGaugCGUCU------------GCGGGGGCUGC--UCC- -5'
27035 5' -60.3 NC_005832.1 + 80048 0.66 0.657198
Target:  5'- gCUCCUGCGCGcAgGCCCCCaucgcCGaAGGg -3'
miRNA:   3'- -GGGGAUGCGUcUgCGGGGGcu---GC-UCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.