miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27035 5' -60.3 NC_005832.1 + 12992 1.1 0.000837
Target:  5'- uCCCCUACGCAGACGCCCCCGACGAGGc -3'
miRNA:   3'- -GGGGAUGCGUCUGCGGGGGCUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 35567 0.78 0.152164
Target:  5'- cCCaCCUagACGCAGAgGCgCCCaCGGCGGGGg -3'
miRNA:   3'- -GG-GGA--UGCGUCUgCG-GGG-GCUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 19771 0.74 0.277457
Target:  5'- cCCCCgagGCGCuuucccccGGCGCCCgUgGACGAGGc -3'
miRNA:   3'- -GGGGa--UGCGu-------CUGCGGG-GgCUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 40343 0.73 0.303843
Target:  5'- cUCCCUAuuUGCGGGCGCCauagCCCGGC-AGGa -3'
miRNA:   3'- -GGGGAU--GCGUCUGCGG----GGGCUGcUCC- -5'
27035 5' -60.3 NC_005832.1 + 66047 0.73 0.317743
Target:  5'- gCCCUggACGCAcuACGUCCCCG-UGAGGg -3'
miRNA:   3'- gGGGA--UGCGUc-UGCGGGGGCuGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 39285 0.72 0.332116
Target:  5'- gCCCCgcggGCGCAGACGgaguccacguCCaCCUGGCGGGu -3'
miRNA:   3'- -GGGGa---UGCGUCUGC----------GG-GGGCUGCUCc -5'
27035 5' -60.3 NC_005832.1 + 35142 0.72 0.346961
Target:  5'- gUCCCUGCcuucggaCAGGgGCCCuCCGACGuGGa -3'
miRNA:   3'- -GGGGAUGc------GUCUgCGGG-GGCUGCuCC- -5'
27035 5' -60.3 NC_005832.1 + 880 0.72 0.362275
Target:  5'- gCCCCUgggugugaagGCGCugcaGCCCCCGGCGuagcAGGg -3'
miRNA:   3'- -GGGGA----------UGCGucugCGGGGGCUGC----UCC- -5'
27035 5' -60.3 NC_005832.1 + 44053 0.71 0.378052
Target:  5'- aCCCguugUGCGCGGGgGCCCUCGucAgGAGGg -3'
miRNA:   3'- gGGG----AUGCGUCUgCGGGGGC--UgCUCC- -5'
27035 5' -60.3 NC_005832.1 + 39469 0.71 0.378052
Target:  5'- gCCCUGguCGCcGuCGUCCCCGGgGGGGg -3'
miRNA:   3'- gGGGAU--GCGuCuGCGGGGGCUgCUCC- -5'
27035 5' -60.3 NC_005832.1 + 53935 0.71 0.410961
Target:  5'- aCCCCaggcgaaggggACGUAGGCcuuuCCCCCGggcGCGAGGg -3'
miRNA:   3'- -GGGGa----------UGCGUCUGc---GGGGGC---UGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 52929 0.71 0.419462
Target:  5'- gCCCCUGgGCAGcAUGgCCCCggGACGcaAGGg -3'
miRNA:   3'- -GGGGAUgCGUC-UGCgGGGG--CUGC--UCC- -5'
27035 5' -60.3 NC_005832.1 + 90278 0.71 0.419462
Target:  5'- gCUCUugGCAuuuuuCGCCucagucuuuCCCGACGAGGg -3'
miRNA:   3'- gGGGAugCGUcu---GCGG---------GGGCUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 502 0.7 0.449141
Target:  5'- gCCCCUguggGCcgaguaccacuuucuGCAccaGCCCCCGGCGGGGu -3'
miRNA:   3'- -GGGGA----UG---------------CGUcugCGGGGGCUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 5195 0.7 0.472602
Target:  5'- gCCCUGgaGCAcGACGaCCCCGccguCGAGGg -3'
miRNA:   3'- gGGGAUg-CGU-CUGCgGGGGCu---GCUCC- -5'
27035 5' -60.3 NC_005832.1 + 19857 0.7 0.472602
Target:  5'- gCCCCUGgGCcuGACGgucCCCCUGACGGu- -3'
miRNA:   3'- -GGGGAUgCGu-CUGC---GGGGGCUGCUcc -5'
27035 5' -60.3 NC_005832.1 + 90448 0.7 0.472602
Target:  5'- cUCCCUAaaguCGUAGACGCCgUUGGCGAa- -3'
miRNA:   3'- -GGGGAU----GCGUCUGCGGgGGCUGCUcc -5'
27035 5' -60.3 NC_005832.1 + 36406 0.69 0.481789
Target:  5'- gUCCauaguCGCAGAgGCCgCCG-CGAGGg -3'
miRNA:   3'- -GGGgau--GCGUCUgCGGgGGCuGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 94233 0.69 0.481789
Target:  5'- cCCCCUAUuuuCGGGCuucGCCCUCGACGGuucGGg -3'
miRNA:   3'- -GGGGAUGc--GUCUG---CGGGGGCUGCU---CC- -5'
27035 5' -60.3 NC_005832.1 + 86464 0.69 0.481789
Target:  5'- aUCCUGCGCAGcagcaagaggaGCaGCCgCCUGAgGAGGc -3'
miRNA:   3'- gGGGAUGCGUC-----------UG-CGG-GGGCUgCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.