Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27035 | 5' | -60.3 | NC_005832.1 | + | 26331 | 0.66 | 0.667132 |
Target: 5'- aCCUCUGCcCGGugG-CCUCGcCGGGGa -3' miRNA: 3'- -GGGGAUGcGUCugCgGGGGCuGCUCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 9900 | 0.68 | 0.538569 |
Target: 5'- gCCUCcGCgGCcGACGCgCCCGACGAagcGGg -3' miRNA: 3'- -GGGGaUG-CGuCUGCGgGGGCUGCU---CC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 67028 | 0.68 | 0.567823 |
Target: 5'- gCCCUG-GCGG-CGgCCgUGGCGAGGg -3' miRNA: 3'- gGGGAUgCGUCuGCgGGgGCUGCUCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 30165 | 0.68 | 0.577667 |
Target: 5'- -gCUUGCGguG-CGCuCCCCuGCGAGGu -3' miRNA: 3'- ggGGAUGCguCuGCG-GGGGcUGCUCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 42389 | 0.67 | 0.594484 |
Target: 5'- gCCCUccucauggagcagcACGCGucCGCCCCCGAgGAc- -3' miRNA: 3'- gGGGA--------------UGCGUcuGCGGGGGCUgCUcc -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 72550 | 0.67 | 0.607396 |
Target: 5'- ----cGCGUAGACgGUCCCCGugGGGa -3' miRNA: 3'- ggggaUGCGUCUG-CGGGGGCugCUCc -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 8116 | 0.67 | 0.61735 |
Target: 5'- aCCCCUGaGCAgGGCgGCCUUCGAgGAGu -3' miRNA: 3'- -GGGGAUgCGU-CUG-CGGGGGCUgCUCc -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 43058 | 0.67 | 0.637282 |
Target: 5'- gUCCCUACG-AGACGCCCgaGG-GAGa -3' miRNA: 3'- -GGGGAUGCgUCUGCGGGggCUgCUCc -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 42426 | 0.66 | 0.657198 |
Target: 5'- aCCCCgugGCGGAucuggccaagcaCGUCCCUGACGgcAGGu -3' miRNA: 3'- -GGGGaugCGUCU------------GCGGGGGCUGC--UCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 75982 | 0.69 | 0.519355 |
Target: 5'- aCCUCUugGCcGugGCCCCCaACGc-- -3' miRNA: 3'- -GGGGAugCGuCugCGGGGGcUGCucc -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 12840 | 0.69 | 0.509849 |
Target: 5'- gCCUUACGCAGcacagcuCGgCCUCGuCGGGGg -3' miRNA: 3'- gGGGAUGCGUCu------GCgGGGGCuGCUCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 90448 | 0.7 | 0.472602 |
Target: 5'- cUCCCUAaaguCGUAGACGCCgUUGGCGAa- -3' miRNA: 3'- -GGGGAU----GCGUCUGCGGgGGCUGCUcc -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 19771 | 0.74 | 0.277457 |
Target: 5'- cCCCCgagGCGCuuucccccGGCGCCCgUgGACGAGGc -3' miRNA: 3'- -GGGGa--UGCGu-------CUGCGGG-GgCUGCUCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 66047 | 0.73 | 0.317743 |
Target: 5'- gCCCUggACGCAcuACGUCCCCG-UGAGGg -3' miRNA: 3'- gGGGA--UGCGUc-UGCGGGGGCuGCUCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 39285 | 0.72 | 0.332116 |
Target: 5'- gCCCCgcggGCGCAGACGgaguccacguCCaCCUGGCGGGu -3' miRNA: 3'- -GGGGa---UGCGUCUGC----------GG-GGGCUGCUCc -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 35142 | 0.72 | 0.346961 |
Target: 5'- gUCCCUGCcuucggaCAGGgGCCCuCCGACGuGGa -3' miRNA: 3'- -GGGGAUGc------GUCUgCGGG-GGCUGCuCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 880 | 0.72 | 0.362275 |
Target: 5'- gCCCCUgggugugaagGCGCugcaGCCCCCGGCGuagcAGGg -3' miRNA: 3'- -GGGGA----------UGCGucugCGGGGGCUGC----UCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 44053 | 0.71 | 0.378052 |
Target: 5'- aCCCguugUGCGCGGGgGCCCUCGucAgGAGGg -3' miRNA: 3'- gGGG----AUGCGUCUgCGGGGGC--UgCUCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 502 | 0.7 | 0.449141 |
Target: 5'- gCCCCUguggGCcgaguaccacuuucuGCAccaGCCCCCGGCGGGGu -3' miRNA: 3'- -GGGGA----UG---------------CGUcugCGGGGGCUGCUCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 5195 | 0.7 | 0.472602 |
Target: 5'- gCCCUGgaGCAcGACGaCCCCGccguCGAGGg -3' miRNA: 3'- gGGGAUg-CGU-CUGCgGGGGCu---GCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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