miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27035 5' -60.3 NC_005832.1 + 12992 1.1 0.000837
Target:  5'- uCCCCUACGCAGACGCCCCCGACGAGGc -3'
miRNA:   3'- -GGGGAUGCGUCUGCGGGGGCUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 44039 0.67 0.647246
Target:  5'- gUCCUguaggugACGCAGGaaaaaagGCCCCUGuccaACGAGGa -3'
miRNA:   3'- -GGGGa------UGCGUCUg------CGGGGGC----UGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 80048 0.66 0.657198
Target:  5'- gCUCCUGCGCGcAgGCCCCCaucgcCGaAGGg -3'
miRNA:   3'- -GGGGAUGCGUcUgCGGGGGcu---GC-UCC- -5'
27035 5' -60.3 NC_005832.1 + 76190 0.66 0.716234
Target:  5'- aCCCUgguccuguggACGUAGGcCGCCCCgaucucuggcuCGACGcuAGGa -3'
miRNA:   3'- gGGGA----------UGCGUCU-GCGGGG-----------GCUGC--UCC- -5'
27035 5' -60.3 NC_005832.1 + 90278 0.71 0.419462
Target:  5'- gCUCUugGCAuuuuuCGCCucagucuuuCCCGACGAGGg -3'
miRNA:   3'- gGGGAugCGUcu---GCGG---------GGGCUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 52929 0.71 0.419462
Target:  5'- gCCCCUGgGCAGcAUGgCCCCggGACGcaAGGg -3'
miRNA:   3'- -GGGGAUgCGUC-UGCgGGGG--CUGC--UCC- -5'
27035 5' -60.3 NC_005832.1 + 36406 0.69 0.481789
Target:  5'- gUCCauaguCGCAGAgGCCgCCG-CGAGGg -3'
miRNA:   3'- -GGGgau--GCGUCUgCGGgGGCuGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 94233 0.69 0.481789
Target:  5'- cCCCCUAUuuuCGGGCuucGCCCUCGACGGuucGGg -3'
miRNA:   3'- -GGGGAUGc--GUCUG---CGGGGGCUGCU---CC- -5'
27035 5' -60.3 NC_005832.1 + 32874 0.69 0.525092
Target:  5'- uCUCCUGCcucccGCAGACaccuccagccucuCCCCgGACGAGGc -3'
miRNA:   3'- -GGGGAUG-----CGUCUGc------------GGGGgCUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 36667 0.67 0.627314
Target:  5'- aCgCCaACGCccuGugGCCCCCGGCccuGGc -3'
miRNA:   3'- -GgGGaUGCGu--CugCGGGGGCUGcu-CC- -5'
27035 5' -60.3 NC_005832.1 + 26493 0.68 0.567823
Target:  5'- aCCUggagacugACGgGGGCacggucaucGUCCCCGGCGAGGc -3'
miRNA:   3'- gGGGa-------UGCgUCUG---------CGGGGGCUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 32967 0.69 0.525092
Target:  5'- uCUCCUGCcuucgGCAGACaccuccagccucuCCCCgGACGAGGc -3'
miRNA:   3'- -GGGGAUG-----CGUCUGc------------GGGGgCUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 40343 0.73 0.303843
Target:  5'- cUCCCUAuuUGCGGGCGCCauagCCCGGC-AGGa -3'
miRNA:   3'- -GGGGAU--GCGUCUGCGG----GGGCUGcUCC- -5'
27035 5' -60.3 NC_005832.1 + 80943 0.68 0.577667
Target:  5'- cCCCCUGuuUGCAGcgaaGCUCCUGACGGa- -3'
miRNA:   3'- -GGGGAU--GCGUCug--CGGGGGCUGCUcc -5'
27035 5' -60.3 NC_005832.1 + 39469 0.71 0.378052
Target:  5'- gCCCUGguCGCcGuCGUCCCCGGgGGGGg -3'
miRNA:   3'- gGGGAU--GCGuCuGCGGGGGCUgCUCC- -5'
27035 5' -60.3 NC_005832.1 + 86464 0.69 0.481789
Target:  5'- aUCCUGCGCAGcagcaagaggaGCaGCCgCCUGAgGAGGc -3'
miRNA:   3'- gGGGAUGCGUC-----------UG-CGG-GGGCUgCUCC- -5'
27035 5' -60.3 NC_005832.1 + 103522 0.67 0.61735
Target:  5'- uUCCCaaaAUGCAGaAUGCaCCCagaGACGGGGc -3'
miRNA:   3'- -GGGGa--UGCGUC-UGCG-GGGg--CUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 75486 0.67 0.647246
Target:  5'- uCCCCUuucgACGCacaucaugaAGACGUcggugauguuuaCCCCGugGuGGa -3'
miRNA:   3'- -GGGGA----UGCG---------UCUGCG------------GGGGCugCuCC- -5'
27035 5' -60.3 NC_005832.1 + 53935 0.71 0.410961
Target:  5'- aCCCCaggcgaaggggACGUAGGCcuuuCCCCCGggcGCGAGGg -3'
miRNA:   3'- -GGGGa----------UGCGUCUGc---GGGGGC---UGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 19857 0.7 0.472602
Target:  5'- gCCCCUGgGCcuGACGgucCCCCUGACGGu- -3'
miRNA:   3'- -GGGGAUgCGu-CUGC---GGGGGCUGCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.