miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27035 5' -60.3 NC_005832.1 + 502 0.7 0.449141
Target:  5'- gCCCCUguggGCcgaguaccacuuucuGCAccaGCCCCCGGCGGGGu -3'
miRNA:   3'- -GGGGA----UG---------------CGUcugCGGGGGCUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 880 0.72 0.362275
Target:  5'- gCCCCUgggugugaagGCGCugcaGCCCCCGGCGuagcAGGg -3'
miRNA:   3'- -GGGGA----------UGCGucugCGGGGGCUGC----UCC- -5'
27035 5' -60.3 NC_005832.1 + 5195 0.7 0.472602
Target:  5'- gCCCUGgaGCAcGACGaCCCCGccguCGAGGg -3'
miRNA:   3'- gGGGAUg-CGU-CUGCgGGGGCu---GCUCC- -5'
27035 5' -60.3 NC_005832.1 + 8116 0.67 0.61735
Target:  5'- aCCCCUGaGCAgGGCgGCCUUCGAgGAGu -3'
miRNA:   3'- -GGGGAUgCGU-CUG-CGGGGGCUgCUCc -5'
27035 5' -60.3 NC_005832.1 + 9900 0.68 0.538569
Target:  5'- gCCUCcGCgGCcGACGCgCCCGACGAagcGGg -3'
miRNA:   3'- -GGGGaUG-CGuCUGCGgGGGCUGCU---CC- -5'
27035 5' -60.3 NC_005832.1 + 11750 0.66 0.706516
Target:  5'- aCCCUGC-UGGACGCuuuCCCCGGaGAGa -3'
miRNA:   3'- gGGGAUGcGUCUGCG---GGGGCUgCUCc -5'
27035 5' -60.3 NC_005832.1 + 12840 0.69 0.509849
Target:  5'- gCCUUACGCAGcacagcuCGgCCUCGuCGGGGg -3'
miRNA:   3'- gGGGAUGCGUCu------GCgGGGGCuGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 12992 1.1 0.000837
Target:  5'- uCCCCUACGCAGACGCCCCCGACGAGGc -3'
miRNA:   3'- -GGGGAUGCGUCUGCGGGGGCUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 13169 0.66 0.677038
Target:  5'- cCCCCgagcugGCAGcCGUCUCCGA-GAGGc -3'
miRNA:   3'- -GGGGaug---CGUCuGCGGGGGCUgCUCC- -5'
27035 5' -60.3 NC_005832.1 + 19771 0.74 0.277457
Target:  5'- cCCCCgagGCGCuuucccccGGCGCCCgUgGACGAGGc -3'
miRNA:   3'- -GGGGa--UGCGu-------CUGCGGG-GgCUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 19857 0.7 0.472602
Target:  5'- gCCCCUGgGCcuGACGgucCCCCUGACGGu- -3'
miRNA:   3'- -GGGGAUgCGu-CUGC---GGGGGCUGCUcc -5'
27035 5' -60.3 NC_005832.1 + 26331 0.66 0.667132
Target:  5'- aCCUCUGCcCGGugG-CCUCGcCGGGGa -3'
miRNA:   3'- -GGGGAUGcGUCugCgGGGGCuGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 26493 0.68 0.567823
Target:  5'- aCCUggagacugACGgGGGCacggucaucGUCCCCGGCGAGGc -3'
miRNA:   3'- gGGGa-------UGCgUCUG---------CGGGGGCUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 29525 0.66 0.667132
Target:  5'- cUCCCUGaGCGGAgGCCaCCagGAUGAGa -3'
miRNA:   3'- -GGGGAUgCGUCUgCGG-GGg-CUGCUCc -5'
27035 5' -60.3 NC_005832.1 + 30165 0.68 0.577667
Target:  5'- -gCUUGCGguG-CGCuCCCCuGCGAGGu -3'
miRNA:   3'- ggGGAUGCguCuGCG-GGGGcUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 32874 0.69 0.525092
Target:  5'- uCUCCUGCcucccGCAGACaccuccagccucuCCCCgGACGAGGc -3'
miRNA:   3'- -GGGGAUG-----CGUCUGc------------GGGGgCUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 32967 0.69 0.525092
Target:  5'- uCUCCUGCcuucgGCAGACaccuccagccucuCCCCgGACGAGGc -3'
miRNA:   3'- -GGGGAUG-----CGUCUGc------------GGGGgCUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 35142 0.72 0.346961
Target:  5'- gUCCCUGCcuucggaCAGGgGCCCuCCGACGuGGa -3'
miRNA:   3'- -GGGGAUGc------GUCUgCGGG-GGCUGCuCC- -5'
27035 5' -60.3 NC_005832.1 + 35567 0.78 0.152164
Target:  5'- cCCaCCUagACGCAGAgGCgCCCaCGGCGGGGg -3'
miRNA:   3'- -GG-GGA--UGCGUCUgCG-GGG-GCUGCUCC- -5'
27035 5' -60.3 NC_005832.1 + 35704 0.68 0.548268
Target:  5'- cCCCCgcCGUGGGCGCCUCUG-CGucuAGGu -3'
miRNA:   3'- -GGGGauGCGUCUGCGGGGGCuGC---UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.