Results 1 - 20 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27035 | 5' | -60.3 | NC_005832.1 | + | 103522 | 0.67 | 0.61735 |
Target: 5'- uUCCCaaaAUGCAGaAUGCaCCCagaGACGGGGc -3' miRNA: 3'- -GGGGa--UGCGUC-UGCG-GGGg--CUGCUCC- -5' |
|||||||
27035 | 5' | -60.3 | NC_005832.1 | + | 94233 | 0.69 | 0.481789 |
Target: 5'- cCCCCUAUuuuCGGGCuucGCCCUCGACGGuucGGg -3' miRNA: 3'- -GGGGAUGc--GUCUG---CGGGGGCUGCU---CC- -5' |
|||||||
27035 | 5' | -60.3 | NC_005832.1 | + | 90448 | 0.7 | 0.472602 |
Target: 5'- cUCCCUAaaguCGUAGACGCCgUUGGCGAa- -3' miRNA: 3'- -GGGGAU----GCGUCUGCGGgGGCUGCUcc -5' |
|||||||
27035 | 5' | -60.3 | NC_005832.1 | + | 90278 | 0.71 | 0.419462 |
Target: 5'- gCUCUugGCAuuuuuCGCCucagucuuuCCCGACGAGGg -3' miRNA: 3'- gGGGAugCGUcu---GCGG---------GGGCUGCUCC- -5' |
|||||||
27035 | 5' | -60.3 | NC_005832.1 | + | 86464 | 0.69 | 0.481789 |
Target: 5'- aUCCUGCGCAGcagcaagaggaGCaGCCgCCUGAgGAGGc -3' miRNA: 3'- gGGGAUGCGUC-----------UG-CGG-GGGCUgCUCC- -5' |
|||||||
27035 | 5' | -60.3 | NC_005832.1 | + | 80943 | 0.68 | 0.577667 |
Target: 5'- cCCCCUGuuUGCAGcgaaGCUCCUGACGGa- -3' miRNA: 3'- -GGGGAU--GCGUCug--CGGGGGCUGCUcc -5' |
|||||||
27035 | 5' | -60.3 | NC_005832.1 | + | 80048 | 0.66 | 0.657198 |
Target: 5'- gCUCCUGCGCGcAgGCCCCCaucgcCGaAGGg -3' miRNA: 3'- -GGGGAUGCGUcUgCGGGGGcu---GC-UCC- -5' |
|||||||
27035 | 5' | -60.3 | NC_005832.1 | + | 76190 | 0.66 | 0.716234 |
Target: 5'- aCCCUgguccuguggACGUAGGcCGCCCCgaucucuggcuCGACGcuAGGa -3' miRNA: 3'- gGGGA----------UGCGUCU-GCGGGG-----------GCUGC--UCC- -5' |
|||||||
27035 | 5' | -60.3 | NC_005832.1 | + | 75982 | 0.69 | 0.519355 |
Target: 5'- aCCUCUugGCcGugGCCCCCaACGc-- -3' miRNA: 3'- -GGGGAugCGuCugCGGGGGcUGCucc -5' |
|||||||
27035 | 5' | -60.3 | NC_005832.1 | + | 75486 | 0.67 | 0.647246 |
Target: 5'- uCCCCUuucgACGCacaucaugaAGACGUcggugauguuuaCCCCGugGuGGa -3' miRNA: 3'- -GGGGA----UGCG---------UCUGCG------------GGGGCugCuCC- -5' |
|||||||
27035 | 5' | -60.3 | NC_005832.1 | + | 72701 | 0.66 | 0.706516 |
Target: 5'- aCCCUgaaGCcCAGGgGCCCCaCGuccccACGGGGa -3' miRNA: 3'- gGGGA---UGcGUCUgCGGGG-GC-----UGCUCC- -5' |
|||||||
27035 | 5' | -60.3 | NC_005832.1 | + | 72550 | 0.67 | 0.607396 |
Target: 5'- ----cGCGUAGACgGUCCCCGugGGGa -3' miRNA: 3'- ggggaUGCGUCUG-CGGGGGCugCUCc -5' |
|||||||
27035 | 5' | -60.3 | NC_005832.1 | + | 67028 | 0.68 | 0.567823 |
Target: 5'- gCCCUG-GCGG-CGgCCgUGGCGAGGg -3' miRNA: 3'- gGGGAUgCGUCuGCgGGgGCUGCUCC- -5' |
|||||||
27035 | 5' | -60.3 | NC_005832.1 | + | 66047 | 0.73 | 0.317743 |
Target: 5'- gCCCUggACGCAcuACGUCCCCG-UGAGGg -3' miRNA: 3'- gGGGA--UGCGUc-UGCGGGGGCuGCUCC- -5' |
|||||||
27035 | 5' | -60.3 | NC_005832.1 | + | 53935 | 0.71 | 0.410961 |
Target: 5'- aCCCCaggcgaaggggACGUAGGCcuuuCCCCCGggcGCGAGGg -3' miRNA: 3'- -GGGGa----------UGCGUCUGc---GGGGGC---UGCUCC- -5' |
|||||||
27035 | 5' | -60.3 | NC_005832.1 | + | 52929 | 0.71 | 0.419462 |
Target: 5'- gCCCCUGgGCAGcAUGgCCCCggGACGcaAGGg -3' miRNA: 3'- -GGGGAUgCGUC-UGCgGGGG--CUGC--UCC- -5' |
|||||||
27035 | 5' | -60.3 | NC_005832.1 | + | 47918 | 0.66 | 0.677038 |
Target: 5'- aCCCCgAgGCGGAgGUCCuggCCGA-GAGGg -3' miRNA: 3'- -GGGGaUgCGUCUgCGGG---GGCUgCUCC- -5' |
|||||||
27035 | 5' | -60.3 | NC_005832.1 | + | 44053 | 0.71 | 0.378052 |
Target: 5'- aCCCguugUGCGCGGGgGCCCUCGucAgGAGGg -3' miRNA: 3'- gGGG----AUGCGUCUgCGGGGGC--UgCUCC- -5' |
|||||||
27035 | 5' | -60.3 | NC_005832.1 | + | 44039 | 0.67 | 0.647246 |
Target: 5'- gUCCUguaggugACGCAGGaaaaaagGCCCCUGuccaACGAGGa -3' miRNA: 3'- -GGGGa------UGCGUCUg------CGGGGGC----UGCUCC- -5' |
|||||||
27035 | 5' | -60.3 | NC_005832.1 | + | 43343 | 0.66 | 0.677038 |
Target: 5'- aCCCCgcaGCGcCGGAccaCGCCagCCUGGCGGGa -3' miRNA: 3'- -GGGGa--UGC-GUCU---GCGG--GGGCUGCUCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home