Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27035 | 5' | -60.3 | NC_005832.1 | + | 26493 | 0.68 | 0.567823 |
Target: 5'- aCCUggagacugACGgGGGCacggucaucGUCCCCGGCGAGGc -3' miRNA: 3'- gGGGa-------UGCgUCUG---------CGGGGGCUGCUCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 67028 | 0.68 | 0.567823 |
Target: 5'- gCCCUG-GCGG-CGgCCgUGGCGAGGg -3' miRNA: 3'- gGGGAUgCGUCuGCgGGgGCUGCUCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 35704 | 0.68 | 0.548268 |
Target: 5'- cCCCCgcCGUGGGCGCCUCUG-CGucuAGGu -3' miRNA: 3'- -GGGGauGCGUCUGCGGGGGCuGC---UCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 9900 | 0.68 | 0.538569 |
Target: 5'- gCCUCcGCgGCcGACGCgCCCGACGAagcGGg -3' miRNA: 3'- -GGGGaUG-CGuCUGCGgGGGCUGCU---CC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 32874 | 0.69 | 0.525092 |
Target: 5'- uCUCCUGCcucccGCAGACaccuccagccucuCCCCgGACGAGGc -3' miRNA: 3'- -GGGGAUG-----CGUCUGc------------GGGGgCUGCUCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 32967 | 0.69 | 0.525092 |
Target: 5'- uCUCCUGCcuucgGCAGACaccuccagccucuCCCCgGACGAGGc -3' miRNA: 3'- -GGGGAUG-----CGUCUGc------------GGGGgCUGCUCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 75982 | 0.69 | 0.519355 |
Target: 5'- aCCUCUugGCcGugGCCCCCaACGc-- -3' miRNA: 3'- -GGGGAugCGuCugCGGGGGcUGCucc -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 12840 | 0.69 | 0.509849 |
Target: 5'- gCCUUACGCAGcacagcuCGgCCUCGuCGGGGg -3' miRNA: 3'- gGGGAUGCGUCu------GCgGGGGCuGCUCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 86464 | 0.69 | 0.481789 |
Target: 5'- aUCCUGCGCAGcagcaagaggaGCaGCCgCCUGAgGAGGc -3' miRNA: 3'- gGGGAUGCGUC-----------UG-CGG-GGGCUgCUCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 36406 | 0.69 | 0.481789 |
Target: 5'- gUCCauaguCGCAGAgGCCgCCG-CGAGGg -3' miRNA: 3'- -GGGgau--GCGUCUgCGGgGGCuGCUCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 94233 | 0.69 | 0.481789 |
Target: 5'- cCCCCUAUuuuCGGGCuucGCCCUCGACGGuucGGg -3' miRNA: 3'- -GGGGAUGc--GUCUG---CGGGGGCUGCU---CC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 19857 | 0.7 | 0.472602 |
Target: 5'- gCCCCUGgGCcuGACGgucCCCCUGACGGu- -3' miRNA: 3'- -GGGGAUgCGu-CUGC---GGGGGCUGCUcc -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 90448 | 0.7 | 0.472602 |
Target: 5'- cUCCCUAaaguCGUAGACGCCgUUGGCGAa- -3' miRNA: 3'- -GGGGAU----GCGUCUGCGGgGGCUGCUcc -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 5195 | 0.7 | 0.472602 |
Target: 5'- gCCCUGgaGCAcGACGaCCCCGccguCGAGGg -3' miRNA: 3'- gGGGAUg-CGU-CUGCgGGGGCu---GCUCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 502 | 0.7 | 0.449141 |
Target: 5'- gCCCCUguggGCcgaguaccacuuucuGCAccaGCCCCCGGCGGGGu -3' miRNA: 3'- -GGGGA----UG---------------CGUcugCGGGGGCUGCUCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 52929 | 0.71 | 0.419462 |
Target: 5'- gCCCCUGgGCAGcAUGgCCCCggGACGcaAGGg -3' miRNA: 3'- -GGGGAUgCGUC-UGCgGGGG--CUGC--UCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 90278 | 0.71 | 0.419462 |
Target: 5'- gCUCUugGCAuuuuuCGCCucagucuuuCCCGACGAGGg -3' miRNA: 3'- gGGGAugCGUcu---GCGG---------GGGCUGCUCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 53935 | 0.71 | 0.410961 |
Target: 5'- aCCCCaggcgaaggggACGUAGGCcuuuCCCCCGggcGCGAGGg -3' miRNA: 3'- -GGGGa----------UGCGUCUGc---GGGGGC---UGCUCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 44053 | 0.71 | 0.378052 |
Target: 5'- aCCCguugUGCGCGGGgGCCCUCGucAgGAGGg -3' miRNA: 3'- gGGG----AUGCGUCUgCGGGGGC--UgCUCC- -5' |
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27035 | 5' | -60.3 | NC_005832.1 | + | 39469 | 0.71 | 0.378052 |
Target: 5'- gCCCUGguCGCcGuCGUCCCCGGgGGGGg -3' miRNA: 3'- gGGGAU--GCGuCuGCGGGGGCUgCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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