miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27036 5' -62.1 NC_005832.1 + 13119 1.08 0.000641
Target:  5'- gACCCCAGCCUGACGGACCCCGAGACGg -3'
miRNA:   3'- -UGGGGUCGGACUGCCUGGGGCUCUGC- -5'
27036 5' -62.1 NC_005832.1 + 19858 0.81 0.064844
Target:  5'- aGCCCCugGGCCUGACGGuCCCCcuGACGg -3'
miRNA:   3'- -UGGGG--UCGGACUGCCuGGGGcuCUGC- -5'
27036 5' -62.1 NC_005832.1 + 51854 0.78 0.098394
Target:  5'- gACCCgAGCUUGggcACGGACCCCGAGcACu -3'
miRNA:   3'- -UGGGgUCGGAC---UGCCUGGGGCUC-UGc -5'
27036 5' -62.1 NC_005832.1 + 66344 0.76 0.133709
Target:  5'- cACUCgAGCCUGACGGACUUCaGGACGu -3'
miRNA:   3'- -UGGGgUCGGACUGCCUGGGGcUCUGC- -5'
27036 5' -62.1 NC_005832.1 + 90916 0.75 0.163399
Target:  5'- cAUCUCGGCCgagGGCGGGCCCCucagGAGGCu -3'
miRNA:   3'- -UGGGGUCGGa--CUGCCUGGGG----CUCUGc -5'
27036 5' -62.1 NC_005832.1 + 97271 0.75 0.1634
Target:  5'- uCgCCAGCCUGGCcGGCCUCGAGGCc -3'
miRNA:   3'- uGgGGUCGGACUGcCUGGGGCUCUGc -5'
27036 5' -62.1 NC_005832.1 + 48074 0.74 0.179929
Target:  5'- uCCCCAGCCUGAUccacccgcaagugGGAagguCCCUGAGGCu -3'
miRNA:   3'- uGGGGUCGGACUG-------------CCU----GGGGCUCUGc -5'
27036 5' -62.1 NC_005832.1 + 77069 0.73 0.235277
Target:  5'- cGCCCCAGUcaccguCUGACGGGCCuggaagCCGAGuauCGg -3'
miRNA:   3'- -UGGGGUCG------GACUGCCUGG------GGCUCu--GC- -5'
27036 5' -62.1 NC_005832.1 + 56311 0.72 0.264571
Target:  5'- aGCCCUcuauCUUGACGGGCCUgGGGACGu -3'
miRNA:   3'- -UGGGGuc--GGACUGCCUGGGgCUCUGC- -5'
27036 5' -62.1 NC_005832.1 + 78799 0.71 0.290081
Target:  5'- uGCgCCGGCCacucuggGGCGGgcuugaACCCCGGGAUGg -3'
miRNA:   3'- -UGgGGUCGGa------CUGCC------UGGGGCUCUGC- -5'
27036 5' -62.1 NC_005832.1 + 10873 0.71 0.290081
Target:  5'- cGCCUCGGCCUGGgaccaGGACgCCgGGGACc -3'
miRNA:   3'- -UGGGGUCGGACUg----CCUG-GGgCUCUGc -5'
27036 5' -62.1 NC_005832.1 + 90795 0.71 0.296753
Target:  5'- cGCCCuCGGCCgaGAUGaGGCUCCGAGGuCGg -3'
miRNA:   3'- -UGGG-GUCGGa-CUGC-CUGGGGCUCU-GC- -5'
27036 5' -62.1 NC_005832.1 + 43280 0.71 0.31819
Target:  5'- uUCCCAGCCUGACGGuggccagcacggccuCCCUGGG-UGu -3'
miRNA:   3'- uGGGGUCGGACUGCCu--------------GGGGCUCuGC- -5'
27036 5' -62.1 NC_005832.1 + 80880 0.7 0.346783
Target:  5'- aACCCCAGgUUUGA-GG-CCCCGGGACc -3'
miRNA:   3'- -UGGGGUC-GGACUgCCuGGGGCUCUGc -5'
27036 5' -62.1 NC_005832.1 + 72786 0.7 0.362144
Target:  5'- gACCCUuugGGCCgu-CGGGCCCCGcGGGCc -3'
miRNA:   3'- -UGGGG---UCGGacuGCCUGGGGC-UCUGc -5'
27036 5' -62.1 NC_005832.1 + 72894 0.7 0.362144
Target:  5'- cGCCCCuguuGCCUGuagggcccucUGGGCCCCuGGGACc -3'
miRNA:   3'- -UGGGGu---CGGACu---------GCCUGGGG-CUCUGc -5'
27036 5' -62.1 NC_005832.1 + 20298 0.7 0.362144
Target:  5'- aACCCCAGgCUGAacauaCCCGAGACu -3'
miRNA:   3'- -UGGGGUCgGACUgccugGGGCUCUGc -5'
27036 5' -62.1 NC_005832.1 + 4832 0.69 0.381193
Target:  5'- cGCCCCGuacucugcgugcgacGCgUGugGGGCCCaGAGGCc -3'
miRNA:   3'- -UGGGGU---------------CGgACugCCUGGGgCUCUGc -5'
27036 5' -62.1 NC_005832.1 + 47272 0.69 0.386057
Target:  5'- gACCCC-GCC-GACGGaaagcgaguGCCCUGGGGCc -3'
miRNA:   3'- -UGGGGuCGGaCUGCC---------UGGGGCUCUGc -5'
27036 5' -62.1 NC_005832.1 + 53993 0.69 0.386057
Target:  5'- aGCCCCucucCCUGGCGGugCCgUGAG-CGg -3'
miRNA:   3'- -UGGGGuc--GGACUGCCugGG-GCUCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.