Results 1 - 20 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27036 | 5' | -62.1 | NC_005832.1 | + | 1717 | 0.66 | 0.568422 |
Target: 5'- cGCCCCGGUguuuagGA-GGACgUCCGAGGCGu -3' miRNA: 3'- -UGGGGUCGga----CUgCCUG-GGGCUCUGC- -5' |
|||||||
27036 | 5' | -62.1 | NC_005832.1 | + | 4747 | 0.66 | 0.539061 |
Target: 5'- gAUCCCAuCCUGgggucguaaACGGACCCCgucucugccuuGAGGCa -3' miRNA: 3'- -UGGGGUcGGAC---------UGCCUGGGG-----------CUCUGc -5' |
|||||||
27036 | 5' | -62.1 | NC_005832.1 | + | 4832 | 0.69 | 0.381193 |
Target: 5'- cGCCCCGuacucugcgugcgacGCgUGugGGGCCCaGAGGCc -3' miRNA: 3'- -UGGGGU---------------CGgACugCCUGGGgCUCUGc -5' |
|||||||
27036 | 5' | -62.1 | NC_005832.1 | + | 6068 | 0.66 | 0.548796 |
Target: 5'- -aCCUGGCCUGG-GGACCCugCGGGAgGu -3' miRNA: 3'- ugGGGUCGGACUgCCUGGG--GCUCUgC- -5' |
|||||||
27036 | 5' | -62.1 | NC_005832.1 | + | 9732 | 0.68 | 0.434265 |
Target: 5'- uGCCCCAGgauguggaggagcuCCUGACGGugUCUcccgugGAGACc -3' miRNA: 3'- -UGGGGUC--------------GGACUGCCugGGG------CUCUGc -5' |
|||||||
27036 | 5' | -62.1 | NC_005832.1 | + | 10860 | 0.66 | 0.529387 |
Target: 5'- gACCCgCgucgGGCCUGGCGG-CCuuGAGGu- -3' miRNA: 3'- -UGGG-G----UCGGACUGCCuGGggCUCUgc -5' |
|||||||
27036 | 5' | -62.1 | NC_005832.1 | + | 10873 | 0.71 | 0.290081 |
Target: 5'- cGCCUCGGCCUGGgaccaGGACgCCgGGGACc -3' miRNA: 3'- -UGGGGUCGGACUg----CCUG-GGgCUCUGc -5' |
|||||||
27036 | 5' | -62.1 | NC_005832.1 | + | 11813 | 0.67 | 0.482072 |
Target: 5'- uGCCCUGGCuCUGGcCGGGCuCCuCGuGAUGg -3' miRNA: 3'- -UGGGGUCG-GACU-GCCUG-GG-GCuCUGC- -5' |
|||||||
27036 | 5' | -62.1 | NC_005832.1 | + | 13016 | 0.67 | 0.510235 |
Target: 5'- gGCCCCuGGuCUUGACGaGCCUCucgGAGACGg -3' miRNA: 3'- -UGGGG-UC-GGACUGCcUGGGG---CUCUGC- -5' |
|||||||
27036 | 5' | -62.1 | NC_005832.1 | + | 13119 | 1.08 | 0.000641 |
Target: 5'- gACCCCAGCCUGACGGACCCCGAGACGg -3' miRNA: 3'- -UGGGGUCGGACUGCCUGGGGCUCUGC- -5' |
|||||||
27036 | 5' | -62.1 | NC_005832.1 | + | 14170 | 0.66 | 0.548796 |
Target: 5'- --gCCGGUUUGACGGcuGCCaUCGGGACGg -3' miRNA: 3'- uggGGUCGGACUGCC--UGG-GGCUCUGC- -5' |
|||||||
27036 | 5' | -62.1 | NC_005832.1 | + | 19742 | 0.66 | 0.58822 |
Target: 5'- gGCCCaggGGCuUUGGgGGAggcagguuccCCCCGAGGCGc -3' miRNA: 3'- -UGGGg--UCG-GACUgCCU----------GGGGCUCUGC- -5' |
|||||||
27036 | 5' | -62.1 | NC_005832.1 | + | 19858 | 0.81 | 0.064844 |
Target: 5'- aGCCCCugGGCCUGACGGuCCCCcuGACGg -3' miRNA: 3'- -UGGGG--UCGGACUGCCuGGGGcuCUGC- -5' |
|||||||
27036 | 5' | -62.1 | NC_005832.1 | + | 20298 | 0.7 | 0.362144 |
Target: 5'- aACCCCAGgCUGAacauaCCCGAGACu -3' miRNA: 3'- -UGGGGUCgGACUgccugGGGCUCUGc -5' |
|||||||
27036 | 5' | -62.1 | NC_005832.1 | + | 32713 | 0.66 | 0.568422 |
Target: 5'- uCUCgGGCCUGAagggaaGGACgUUGGGACGg -3' miRNA: 3'- uGGGgUCGGACUg-----CCUGgGGCUCUGC- -5' |
|||||||
27036 | 5' | -62.1 | NC_005832.1 | + | 32806 | 0.66 | 0.568422 |
Target: 5'- uCUCgGGCCUGAagggaaGGACgUUGGGACGg -3' miRNA: 3'- uGGGgUCGGACUg-----CCUGgGGCUCUGC- -5' |
|||||||
27036 | 5' | -62.1 | NC_005832.1 | + | 36898 | 0.66 | 0.568422 |
Target: 5'- cACCaCCAGaaaCUacACcGACCCCGAGGCGu -3' miRNA: 3'- -UGG-GGUCg--GAc-UGcCUGGGGCUCUGC- -5' |
|||||||
27036 | 5' | -62.1 | NC_005832.1 | + | 36973 | 0.66 | 0.528422 |
Target: 5'- uACCCCcaucccguuaaaaAGUCUGACgaGGACCUUgaagGAGGCGg -3' miRNA: 3'- -UGGGG-------------UCGGACUG--CCUGGGG----CUCUGC- -5' |
|||||||
27036 | 5' | -62.1 | NC_005832.1 | + | 41818 | 0.67 | 0.491378 |
Target: 5'- aGCCCCcguGCCcaGACGGcaaACCCUGGGAg- -3' miRNA: 3'- -UGGGGu--CGGa-CUGCC---UGGGGCUCUgc -5' |
|||||||
27036 | 5' | -62.1 | NC_005832.1 | + | 43280 | 0.71 | 0.31819 |
Target: 5'- uUCCCAGCCUGACGGuggccagcacggccuCCCUGGG-UGu -3' miRNA: 3'- uGGGGUCGGACUGCCu--------------GGGGCUCuGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home