miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27036 5' -62.1 NC_005832.1 + 19742 0.66 0.58822
Target:  5'- gGCCCaggGGCuUUGGgGGAggcagguuccCCCCGAGGCGc -3'
miRNA:   3'- -UGGGg--UCG-GACUgCCU----------GGGGCUCUGC- -5'
27036 5' -62.1 NC_005832.1 + 41818 0.67 0.491378
Target:  5'- aGCCCCcguGCCcaGACGGcaaACCCUGGGAg- -3'
miRNA:   3'- -UGGGGu--CGGa-CUGCC---UGGGGCUCUgc -5'
27036 5' -62.1 NC_005832.1 + 13016 0.67 0.510235
Target:  5'- gGCCCCuGGuCUUGACGaGCCUCucgGAGACGg -3'
miRNA:   3'- -UGGGG-UC-GGACUGCcUGGGG---CUCUGC- -5'
27036 5' -62.1 NC_005832.1 + 10860 0.66 0.529387
Target:  5'- gACCCgCgucgGGCCUGGCGG-CCuuGAGGu- -3'
miRNA:   3'- -UGGG-G----UCGGACUGCCuGGggCUCUgc -5'
27036 5' -62.1 NC_005832.1 + 14170 0.66 0.548796
Target:  5'- --gCCGGUUUGACGGcuGCCaUCGGGACGg -3'
miRNA:   3'- uggGGUCGGACUGCC--UGG-GGCUCUGC- -5'
27036 5' -62.1 NC_005832.1 + 1717 0.66 0.568422
Target:  5'- cGCCCCGGUguuuagGA-GGACgUCCGAGGCGu -3'
miRNA:   3'- -UGGGGUCGga----CUgCCUG-GGGCUCUGC- -5'
27036 5' -62.1 NC_005832.1 + 36898 0.66 0.568422
Target:  5'- cACCaCCAGaaaCUacACcGACCCCGAGGCGu -3'
miRNA:   3'- -UGG-GGUCg--GAc-UGcCUGGGGCUCUGC- -5'
27036 5' -62.1 NC_005832.1 + 74714 0.66 0.578303
Target:  5'- uCUCCAGUCUuuACGGACCCCGGc--- -3'
miRNA:   3'- uGGGGUCGGAc-UGCCUGGGGCUcugc -5'
27036 5' -62.1 NC_005832.1 + 43753 0.66 0.578303
Target:  5'- uACCCCcaaaagAGCCUGGUGGACUCUagguccguaaaGAGGCu -3'
miRNA:   3'- -UGGGG------UCGGACUGCCUGGGG-----------CUCUGc -5'
27036 5' -62.1 NC_005832.1 + 67051 0.67 0.491378
Target:  5'- gGCCgCgggcguaaagaGGCCUGACcuGGACgCCGAGGCc -3'
miRNA:   3'- -UGGgG-----------UCGGACUG--CCUGgGGCUCUGc -5'
27036 5' -62.1 NC_005832.1 + 11813 0.67 0.482072
Target:  5'- uGCCCUGGCuCUGGcCGGGCuCCuCGuGAUGg -3'
miRNA:   3'- -UGGGGUCG-GACU-GCCUG-GG-GCuCUGC- -5'
27036 5' -62.1 NC_005832.1 + 91248 0.68 0.436898
Target:  5'- cACCCUcuuuAGCCUGugGG-CCuuGGuGGCGu -3'
miRNA:   3'- -UGGGG----UCGGACugCCuGGggCU-CUGC- -5'
27036 5' -62.1 NC_005832.1 + 97271 0.75 0.1634
Target:  5'- uCgCCAGCCUGGCcGGCCUCGAGGCc -3'
miRNA:   3'- uGgGGUCGGACUGcCUGGGGCUCUGc -5'
27036 5' -62.1 NC_005832.1 + 48074 0.74 0.179929
Target:  5'- uCCCCAGCCUGAUccacccgcaagugGGAagguCCCUGAGGCu -3'
miRNA:   3'- uGGGGUCGGACUG-------------CCU----GGGGCUCUGc -5'
27036 5' -62.1 NC_005832.1 + 56311 0.72 0.264571
Target:  5'- aGCCCUcuauCUUGACGGGCCUgGGGACGu -3'
miRNA:   3'- -UGGGGuc--GGACUGCCUGGGgCUCUGC- -5'
27036 5' -62.1 NC_005832.1 + 90795 0.71 0.296753
Target:  5'- cGCCCuCGGCCgaGAUGaGGCUCCGAGGuCGg -3'
miRNA:   3'- -UGGG-GUCGGa-CUGC-CUGGGGCUCU-GC- -5'
27036 5' -62.1 NC_005832.1 + 80880 0.7 0.346783
Target:  5'- aACCCCAGgUUUGA-GG-CCCCGGGACc -3'
miRNA:   3'- -UGGGGUC-GGACUgCCuGGGGCUCUGc -5'
27036 5' -62.1 NC_005832.1 + 20298 0.7 0.362144
Target:  5'- aACCCCAGgCUGAacauaCCCGAGACu -3'
miRNA:   3'- -UGGGGUCgGACUgccugGGGCUCUGc -5'
27036 5' -62.1 NC_005832.1 + 4832 0.69 0.381193
Target:  5'- cGCCCCGuacucugcgugcgacGCgUGugGGGCCCaGAGGCc -3'
miRNA:   3'- -UGGGGU---------------CGgACugCCUGGGgCUCUGc -5'
27036 5' -62.1 NC_005832.1 + 91466 0.69 0.386058
Target:  5'- uACCCCAGCUaGGgGGAgucucgacguCCCCGaAGGCa -3'
miRNA:   3'- -UGGGGUCGGaCUgCCU----------GGGGC-UCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.