miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27039 3' -53.4 NC_005832.1 + 48067 0.66 0.949602
Target:  5'- -gGUGGCC-CUGGACcuGGAGGuaaacucuGAGGUGg -3'
miRNA:   3'- ggUACUGGuGGCCUG--UCUCU--------UUCCGC- -5'
27039 3' -53.4 NC_005832.1 + 89820 0.66 0.949602
Target:  5'- aCCA-GGCCACaUGGaACAGGGuGAGGGUc -3'
miRNA:   3'- -GGUaCUGGUG-GCC-UGUCUC-UUUCCGc -5'
27039 3' -53.4 NC_005832.1 + 32403 0.66 0.945153
Target:  5'- cCCGUGGCgACUGGcucCGGGGcccuAAAGGCc -3'
miRNA:   3'- -GGUACUGgUGGCCu--GUCUC----UUUCCGc -5'
27039 3' -53.4 NC_005832.1 + 43952 0.66 0.945153
Target:  5'- gUCAUGAuggccaCCACCGG-CAGGGccccguGGGCc -3'
miRNA:   3'- -GGUACU------GGUGGCCuGUCUCuu----UCCGc -5'
27039 3' -53.4 NC_005832.1 + 95842 0.66 0.944694
Target:  5'- cCCuagGACCGgCaGGACcaucaagAGGGGAGGGCa -3'
miRNA:   3'- -GGua-CUGGUgG-CCUG-------UCUCUUUCCGc -5'
27039 3' -53.4 NC_005832.1 + 44291 0.66 0.940454
Target:  5'- aCCGUGcCCGCCGGuauccACAGAGcGucGCa -3'
miRNA:   3'- -GGUACuGGUGGCC-----UGUCUCuUucCGc -5'
27039 3' -53.4 NC_005832.1 + 92481 0.66 0.935502
Target:  5'- aCCAgucgGACUACuCuGACGaGGAGAGGCa -3'
miRNA:   3'- -GGUa---CUGGUG-GcCUGUcUCUUUCCGc -5'
27039 3' -53.4 NC_005832.1 + 43833 0.66 0.930297
Target:  5'- -gGUGGCCAUCauGACGGcGGGAGGCu -3'
miRNA:   3'- ggUACUGGUGGc-CUGUCuCUUUCCGc -5'
27039 3' -53.4 NC_005832.1 + 20098 0.67 0.924837
Target:  5'- aCAUGGCgGCagaGGGCAaAGAcAGGCa -3'
miRNA:   3'- gGUACUGgUGg--CCUGUcUCUuUCCGc -5'
27039 3' -53.4 NC_005832.1 + 96045 0.67 0.924277
Target:  5'- cCCAgGACCGgCaGGACcaucaagAGGGGAGGGCc -3'
miRNA:   3'- -GGUaCUGGUgG-CCUG-------UCUCUUUCCGc -5'
27039 3' -53.4 NC_005832.1 + 96729 0.67 0.924277
Target:  5'- gCAUGGCCACCGucuuugaGACGGcAGAcucucacGGCGu -3'
miRNA:   3'- gGUACUGGUGGC-------CUGUC-UCUuu-----CCGC- -5'
27039 3' -53.4 NC_005832.1 + 32615 0.67 0.919122
Target:  5'- aCCAcGACCGCaccaccgccuCGucCGGGGAGAGGCu -3'
miRNA:   3'- -GGUaCUGGUG----------GCcuGUCUCUUUCCGc -5'
27039 3' -53.4 NC_005832.1 + 10222 0.67 0.919122
Target:  5'- gCCGUGuCCGaggucaaGGACaAGAGGAuaaAGGCGg -3'
miRNA:   3'- -GGUACuGGUgg-----CCUG-UCUCUU---UCCGC- -5'
27039 3' -53.4 NC_005832.1 + 36626 0.67 0.917949
Target:  5'- uCCGUGGCCGCCGGcuACGucuuuacGGCGg -3'
miRNA:   3'- -GGUACUGGUGGCC--UGUcucuuu-CCGC- -5'
27039 3' -53.4 NC_005832.1 + 29604 0.67 0.917358
Target:  5'- uCUcgGACUAugugUCGGACAGGGAGguggacaucaucagGGGCa -3'
miRNA:   3'- -GGuaCUGGU----GGCCUGUCUCUU--------------UCCGc -5'
27039 3' -53.4 NC_005832.1 + 91484 0.67 0.913153
Target:  5'- aCCGccGCCAacCCGGGCAGGGucaccAGGCu -3'
miRNA:   3'- -GGUacUGGU--GGCCUGUCUCuu---UCCGc -5'
27039 3' -53.4 NC_005832.1 + 16374 0.67 0.906932
Target:  5'- gCgGUGGCCucAgCGGACAGGGugacguuAAGGCu -3'
miRNA:   3'- -GgUACUGG--UgGCCUGUCUCu------UUCCGc -5'
27039 3' -53.4 NC_005832.1 + 20092 0.67 0.906932
Target:  5'- gCAUGACguCCGGGCuGGAGAugcccGCGa -3'
miRNA:   3'- gGUACUGguGGCCUG-UCUCUuuc--CGC- -5'
27039 3' -53.4 NC_005832.1 + 16992 0.67 0.90046
Target:  5'- aCAUGACCguugcccucaucACCGG--GGAcGAGAGGCa -3'
miRNA:   3'- gGUACUGG------------UGGCCugUCU-CUUUCCGc -5'
27039 3' -53.4 NC_005832.1 + 100647 0.67 0.90046
Target:  5'- aCCA-GGCCGCC-GAgGGAG-AGGGCu -3'
miRNA:   3'- -GGUaCUGGUGGcCUgUCUCuUUCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.