miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27057 3' -51.3 NC_005832.1 + 71619 0.66 0.983458
Target:  5'- -gUCGuCGC-CgcUAGCGGCGCCGccGCc -3'
miRNA:   3'- ggAGCuGCGuGaaAUUGCCGUGGU--CG- -5'
27057 3' -51.3 NC_005832.1 + 72799 0.66 0.983458
Target:  5'- aCgUCGACcCACUUUAcaacauuagccuGgGGUACCAGg -3'
miRNA:   3'- -GgAGCUGcGUGAAAU------------UgCCGUGGUCg -5'
27057 3' -51.3 NC_005832.1 + 11911 0.66 0.983458
Target:  5'- cCCUUGAaggcgaGCACggUUAGCacgGGUACCgaAGCg -3'
miRNA:   3'- -GGAGCUg-----CGUGa-AAUUG---CCGUGG--UCG- -5'
27057 3' -51.3 NC_005832.1 + 97099 0.66 0.98139
Target:  5'- aCCUCaGACGCcCUggAGCaGGcCGCC-GCg -3'
miRNA:   3'- -GGAG-CUGCGuGAaaUUG-CC-GUGGuCG- -5'
27057 3' -51.3 NC_005832.1 + 31199 0.66 0.979134
Target:  5'- gCCUUGACGCACcugacAUGGCagaACCAc- -3'
miRNA:   3'- -GGAGCUGCGUGaaau-UGCCG---UGGUcg -5'
27057 3' -51.3 NC_005832.1 + 23602 0.66 0.976682
Target:  5'- gCCUUGAaGgACUUUAggucgggcaggGCGGCguaaggcagGCCGGCg -3'
miRNA:   3'- -GGAGCUgCgUGAAAU-----------UGCCG---------UGGUCG- -5'
27057 3' -51.3 NC_005832.1 + 41424 0.66 0.976682
Target:  5'- aCCgagGGCGC-CUcccUGACGGCGgCGGCc -3'
miRNA:   3'- -GGag-CUGCGuGAa--AUUGCCGUgGUCG- -5'
27057 3' -51.3 NC_005832.1 + 2264 0.66 0.974024
Target:  5'- gCCUCGcCGaa---UAugGGgGCCAGCa -3'
miRNA:   3'- -GGAGCuGCgugaaAUugCCgUGGUCG- -5'
27057 3' -51.3 NC_005832.1 + 97400 0.66 0.973747
Target:  5'- gCCUCGAgGCcggccagGCUggcgacuACGGCGuCCAGg -3'
miRNA:   3'- -GGAGCUgCG-------UGAaau----UGCCGU-GGUCg -5'
27057 3' -51.3 NC_005832.1 + 45861 0.67 0.971153
Target:  5'- ---gGugGCA----GACGGCACCAGg -3'
miRNA:   3'- ggagCugCGUgaaaUUGCCGUGGUCg -5'
27057 3' -51.3 NC_005832.1 + 45592 0.67 0.961185
Target:  5'- gUCUUGACGUAgUgcu-CGGUGuCCAGCu -3'
miRNA:   3'- -GGAGCUGCGUgAaauuGCCGU-GGUCG- -5'
27057 3' -51.3 NC_005832.1 + 10962 0.67 0.956996
Target:  5'- aCCUUugccgggGAgGUGCUggGA-GGCACCGGCa -3'
miRNA:   3'- -GGAG-------CUgCGUGAaaUUgCCGUGGUCG- -5'
27057 3' -51.3 NC_005832.1 + 1778 0.67 0.956202
Target:  5'- cCCUCGGCgacuggcuggaGCACUUUuccccuuccgaggaGACGGUGgacaacugccuCCAGCa -3'
miRNA:   3'- -GGAGCUG-----------CGUGAAA--------------UUGCCGU-----------GGUCG- -5'
27057 3' -51.3 NC_005832.1 + 95402 0.68 0.953346
Target:  5'- aCCUCGAaGCugUUUGGgGGUcuggaCGGCg -3'
miRNA:   3'- -GGAGCUgCGugAAAUUgCCGug---GUCG- -5'
27057 3' -51.3 NC_005832.1 + 81067 0.68 0.952085
Target:  5'- gCCUCcuGGCGguCUuuacgucggggaccUUGACGGC-CCAGUc -3'
miRNA:   3'- -GGAG--CUGCguGA--------------AAUUGCCGuGGUCG- -5'
27057 3' -51.3 NC_005832.1 + 78835 0.68 0.949054
Target:  5'- gCCUUGaagaagacuGCGC-CUUUGGCGugagcggucuGCGCCGGCc -3'
miRNA:   3'- -GGAGC---------UGCGuGAAAUUGC----------CGUGGUCG- -5'
27057 3' -51.3 NC_005832.1 + 87649 0.68 0.949054
Target:  5'- cCCgUCGugGUAC----AUGGCcGCCAGCc -3'
miRNA:   3'- -GG-AGCugCGUGaaauUGCCG-UGGUCG- -5'
27057 3' -51.3 NC_005832.1 + 13024 0.68 0.944506
Target:  5'- gUCUUGACGagccuCUcggaGACGGCuGCCAGCu -3'
miRNA:   3'- -GGAGCUGCgu---GAaa--UUGCCG-UGGUCG- -5'
27057 3' -51.3 NC_005832.1 + 1574 0.69 0.911758
Target:  5'- aUCUCGcCGUGCa-UGACGGCugUGGCc -3'
miRNA:   3'- -GGAGCuGCGUGaaAUUGCCGugGUCG- -5'
27057 3' -51.3 NC_005832.1 + 20756 0.69 0.905387
Target:  5'- -gUCGACGUACaugUUGGCcagGGCugUAGCc -3'
miRNA:   3'- ggAGCUGCGUGa--AAUUG---CCGugGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.