Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27063 | 3' | -62.4 | NC_005832.1 | + | 72867 | 0.66 | 0.593543 |
Target: 5'- gGC-CCCugGGACCCGucuugcccaaCGGcCCGu -3' miRNA: 3'- gCGaGGGugCCUGGGCug--------GCCuGGCu -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 7458 | 0.66 | 0.593543 |
Target: 5'- gGCUCCUAUGGACUgGGCgcacaGGACa-- -3' miRNA: 3'- gCGAGGGUGCCUGGgCUGg----CCUGgcu -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 67338 | 0.66 | 0.593543 |
Target: 5'- cCGCUCCCccCaGACCCGccACCGccGCCGGa -3' miRNA: 3'- -GCGAGGGu-GcCUGGGC--UGGCc-UGGCU- -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 20002 | 0.66 | 0.583735 |
Target: 5'- uCGCUCCCACcagGGAcaacaCCCaGGCggCGGACgCGAu -3' miRNA: 3'- -GCGAGGGUG---CCU-----GGG-CUG--GCCUG-GCU- -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 40948 | 0.66 | 0.573959 |
Target: 5'- gGCUCCCA-GG-UCCGGCCuGGCCc- -3' miRNA: 3'- gCGAGGGUgCCuGGGCUGGcCUGGcu -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 30115 | 0.66 | 0.573959 |
Target: 5'- aGCUCCCugGGGuucCUCGACgCGGGa-GAu -3' miRNA: 3'- gCGAGGGugCCU---GGGCUG-GCCUggCU- -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 56544 | 0.66 | 0.56325 |
Target: 5'- gCGCUCCCGUGGGagugggguuCCUGGCCGGcaggaggGCCa- -3' miRNA: 3'- -GCGAGGGUGCCU---------GGGCUGGCC-------UGGcu -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 93719 | 0.66 | 0.56325 |
Target: 5'- uCGCUCCCGCuagcacgGGAggCGGCCuGACCGu -3' miRNA: 3'- -GCGAGGGUG-------CCUggGCUGGcCUGGCu -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 96523 | 0.67 | 0.525768 |
Target: 5'- gGCUCUCACGGugUUGGagaUGGcgGCCGAc -3' miRNA: 3'- gCGAGGGUGCCugGGCUg--GCC--UGGCU- -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 95372 | 0.67 | 0.525768 |
Target: 5'- gGUgUCCCGgGGACCCuGGCCGcuCCGGa -3' miRNA: 3'- gCG-AGGGUgCCUGGG-CUGGCcuGGCU- -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 36073 | 0.67 | 0.525768 |
Target: 5'- aCGCUCCUggGCuGGACCaCGACCGccCUGGc -3' miRNA: 3'- -GCGAGGG--UG-CCUGG-GCUGGCcuGGCU- -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 40897 | 0.67 | 0.524819 |
Target: 5'- gGC-CCUGCcaaaggaggGGACCCGACCGGguaagcgGCCGc -3' miRNA: 3'- gCGaGGGUG---------CCUGGGCUGGCC-------UGGCu -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 90305 | 0.67 | 0.52387 |
Target: 5'- aCGCUCUCGCcuggcauccucuuGGGCCUcauGACCGGAgaguuguCCGGg -3' miRNA: 3'- -GCGAGGGUG-------------CCUGGG---CUGGCCU-------GGCU- -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 80894 | 0.67 | 0.516304 |
Target: 5'- gGC-CCCG-GGACCCuuugccgaagcaGACUGGGCCGu -3' miRNA: 3'- gCGaGGGUgCCUGGG------------CUGGCCUGGCu -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 67642 | 0.67 | 0.497589 |
Target: 5'- aGCUCCCuuGGACCUugaGAauGGACCc- -3' miRNA: 3'- gCGAGGGugCCUGGG---CUggCCUGGcu -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 1260 | 0.67 | 0.487425 |
Target: 5'- cCGCcgaccugUCCuCGCGGgACgCCGGCUGGGCCa- -3' miRNA: 3'- -GCG-------AGG-GUGCC-UG-GGCUGGCCUGGcu -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 72641 | 0.68 | 0.479183 |
Target: 5'- gGgUCCCgAUGGGCCCG-CgGGGcCCGAc -3' miRNA: 3'- gCgAGGG-UGCCUGGGCuGgCCU-GGCU- -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 78617 | 0.68 | 0.479183 |
Target: 5'- ---gUCCACGGGCCUGA-CGGACCu- -3' miRNA: 3'- gcgaGGGUGCCUGGGCUgGCCUGGcu -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 39488 | 0.68 | 0.452221 |
Target: 5'- uGCUCCCcUGGGCCC--CUGGGCCc- -3' miRNA: 3'- gCGAGGGuGCCUGGGcuGGCCUGGcu -5' |
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27063 | 3' | -62.4 | NC_005832.1 | + | 66832 | 0.69 | 0.426109 |
Target: 5'- aGgUCCCcaaacACGGuCCCGGCCGcGGCCu- -3' miRNA: 3'- gCgAGGG-----UGCCuGGGCUGGC-CUGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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