miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27066 3' -49.7 NC_005832.1 + 91393 0.66 0.993727
Target:  5'- -cUAAAGAacaCGGACCUGcccGCCGgguGGAu -3'
miRNA:   3'- ccAUUUCU---GCCUGGAC---CGGCauuUCU- -5'
27066 3' -49.7 NC_005832.1 + 47477 0.66 0.993727
Target:  5'- --gAAAGAUGGACgUGGUgGgcGAGu -3'
miRNA:   3'- ccaUUUCUGCCUGgACCGgCauUUCu -5'
27066 3' -49.7 NC_005832.1 + 35345 0.66 0.993727
Target:  5'- gGGUAGAGGCuucGGAUccuuccgaCUGGCaCGcgGAAGAg -3'
miRNA:   3'- -CCAUUUCUG---CCUG--------GACCG-GCa-UUUCU- -5'
27066 3' -49.7 NC_005832.1 + 72292 0.66 0.993727
Target:  5'- gGGUcccAGGGGC-GACCaggGGCCGcAAGGAg -3'
miRNA:   3'- -CCA---UUUCUGcCUGGa--CCGGCaUUUCU- -5'
27066 3' -49.7 NC_005832.1 + 94747 0.66 0.992729
Target:  5'- uGGUcuGGAgGGACUgcaGGCCcagGAGGAu -3'
miRNA:   3'- -CCAuuUCUgCCUGGa--CCGGca-UUUCU- -5'
27066 3' -49.7 NC_005832.1 + 5700 0.66 0.992729
Target:  5'- cGGggGAGACGGugACCaGGCCGc----- -3'
miRNA:   3'- -CCauUUCUGCC--UGGaCCGGCauuucu -5'
27066 3' -49.7 NC_005832.1 + 84776 0.66 0.991608
Target:  5'- cGUAA--ACGGACCgUGGaCCGUGGAc- -3'
miRNA:   3'- cCAUUucUGCCUGG-ACC-GGCAUUUcu -5'
27066 3' -49.7 NC_005832.1 + 93703 0.66 0.991608
Target:  5'- --gGGAGGCGG-CCUGaCCGUAAAc- -3'
miRNA:   3'- ccaUUUCUGCCuGGACcGGCAUUUcu -5'
27066 3' -49.7 NC_005832.1 + 24466 0.66 0.991608
Target:  5'- cGGUGGAGGCacGugCUGGCCa------ -3'
miRNA:   3'- -CCAUUUCUGc-CugGACCGGcauuucu -5'
27066 3' -49.7 NC_005832.1 + 65780 0.66 0.991489
Target:  5'- -cUGAAGACGGccaggGCCUuccuguccuuccaGGCCGgcAGGGa -3'
miRNA:   3'- ccAUUUCUGCC-----UGGA-------------CCGGCauUUCU- -5'
27066 3' -49.7 NC_005832.1 + 76391 0.66 0.990222
Target:  5'- --cAAGGGCcucuacuacuugaGGACCUGcGCCGgGAGGAc -3'
miRNA:   3'- ccaUUUCUG-------------CCUGGAC-CGGCaUUUCU- -5'
27066 3' -49.7 NC_005832.1 + 55615 0.67 0.988959
Target:  5'- cGGUGGGGACGGuuuuCC-GGCCcacAGGGGu -3'
miRNA:   3'- -CCAUUUCUGCCu---GGaCCGGca-UUUCU- -5'
27066 3' -49.7 NC_005832.1 + 32249 0.67 0.987248
Target:  5'- uGGUGAGGG-GGGCgaGGCUGaccgcccUAGAGAa -3'
miRNA:   3'- -CCAUUUCUgCCUGgaCCGGC-------AUUUCU- -5'
27066 3' -49.7 NC_005832.1 + 63911 0.67 0.985702
Target:  5'- --gGAGGACGGAgaUGGCgGUcgcAGAGAg -3'
miRNA:   3'- ccaUUUCUGCCUggACCGgCA---UUUCU- -5'
27066 3' -49.7 NC_005832.1 + 32452 0.67 0.985702
Target:  5'- --aGGAGGCaGuACCUGGCCGcAAAGu -3'
miRNA:   3'- ccaUUUCUGcC-UGGACCGGCaUUUCu -5'
27066 3' -49.7 NC_005832.1 + 72739 0.67 0.983819
Target:  5'- uGGgcAAGACGGGuCCcaggGGCCcaGAGGGc -3'
miRNA:   3'- -CCauUUCUGCCU-GGa---CCGGcaUUUCU- -5'
27066 3' -49.7 NC_005832.1 + 10751 0.68 0.977043
Target:  5'- aGGUuagGAGGAUGGccgggcagaACCUGGCCGa----- -3'
miRNA:   3'- -CCA---UUUCUGCC---------UGGACCGGCauuucu -5'
27066 3' -49.7 NC_005832.1 + 51023 0.68 0.977043
Target:  5'- cGGgcAGGugGGACCgacaGGCagGUuuGGAc -3'
miRNA:   3'- -CCauUUCugCCUGGa---CCGg-CAuuUCU- -5'
27066 3' -49.7 NC_005832.1 + 1909 0.68 0.974376
Target:  5'- ---cAAGAgGGGCCUGGCCau--GGAc -3'
miRNA:   3'- ccauUUCUgCCUGGACCGGcauuUCU- -5'
27066 3' -49.7 NC_005832.1 + 80762 0.68 0.974376
Target:  5'- gGGuUGGGGAUgaGGACCgGGUCGUGAgucaGGAg -3'
miRNA:   3'- -CC-AUUUCUG--CCUGGaCCGGCAUU----UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.