Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27079 | 3' | -52.7 | NC_005832.1 | + | 50546 | 1.13 | 0.002079 |
Target: 5'- gCUCAGACCAUAAGGACUUGGGCCACCa -3' miRNA: 3'- -GAGUCUGGUAUUCCUGAACCCGGUGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 2147 | 0.68 | 0.882814 |
Target: 5'- --aGGACCGUcuuaaaguccgagGGGGACa-GGGCCACg -3' miRNA: 3'- gagUCUGGUA-------------UUCCUGaaCCCGGUGg -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 84693 | 0.68 | 0.890724 |
Target: 5'- gUUGGACCAgggcUAGGGACga-GGCCAUg -3' miRNA: 3'- gAGUCUGGU----AUUCCUGaacCCGGUGg -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 43938 | 0.66 | 0.956778 |
Target: 5'- ----cACCGgcAGGGCcccgUGGGCCAUCu -3' miRNA: 3'- gagucUGGUauUCCUGa---ACCCGGUGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 72800 | 0.74 | 0.570756 |
Target: 5'- cCUgGGACCAacGGGACccuUUGGGCCGUCg -3' miRNA: 3'- -GAgUCUGGUauUCCUG---AACCCGGUGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 32806 | 0.74 | 0.602694 |
Target: 5'- uCUCGGGCCugaagggAAGGACgUUGGGaCgGCCu -3' miRNA: 3'- -GAGUCUGGua-----UUCCUG-AACCC-GgUGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 101878 | 0.73 | 0.613398 |
Target: 5'- --aGGGCCGggAAGGGCUUGGaccCCACCa -3' miRNA: 3'- gagUCUGGUa-UUCCUGAACCc--GGUGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 53410 | 0.72 | 0.677635 |
Target: 5'- gUCAGGCUAaagAAGGACgacgcugUcgucaagaGGGCCACCg -3' miRNA: 3'- gAGUCUGGUa--UUCCUGa------A--------CCCGGUGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 80580 | 0.7 | 0.780272 |
Target: 5'- uCUCAGgaugggagcaGCCAggGGGGGCaUGGGCCaagucACCa -3' miRNA: 3'- -GAGUC----------UGGUa-UUCCUGaACCCGG-----UGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 1256 | 0.68 | 0.868458 |
Target: 5'- ---cGACCuguccucgcGGGACgccggcUGGGCCACCa -3' miRNA: 3'- gaguCUGGuau------UCCUGa-----ACCCGGUGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 72983 | 0.69 | 0.826786 |
Target: 5'- gUCuGGGCCcUGAGGGCgcucaGGGCC-CCa -3' miRNA: 3'- gAG-UCUGGuAUUCCUGaa---CCCGGuGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 79106 | 0.71 | 0.750534 |
Target: 5'- --gAGGuCCGUGAGGACguaGGGCCugaACCu -3' miRNA: 3'- gagUCU-GGUAUUCCUGaa-CCCGG---UGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 51068 | 0.76 | 0.488167 |
Target: 5'- -aCGGGCCAUAGGGAgUcaUGGGUC-CCg -3' miRNA: 3'- gaGUCUGGUAUUCCUgA--ACCCGGuGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 26609 | 0.69 | 0.852439 |
Target: 5'- ---cGGCCuuUAAGGugGCgaGGGCCGCCg -3' miRNA: 3'- gaguCUGGu-AUUCC--UGaaCCCGGUGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 82797 | 0.75 | 0.528868 |
Target: 5'- uUguGACUAUcaAGGGACUgucgGGGUCACCc -3' miRNA: 3'- gAguCUGGUA--UUCCUGAa---CCCGGUGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 42522 | 0.71 | 0.730119 |
Target: 5'- -gCGGAcgcgugcugcuCCAUGAGGA---GGGCCGCCa -3' miRNA: 3'- gaGUCU-----------GGUAUUCCUgaaCCCGGUGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 87227 | 0.69 | 0.860562 |
Target: 5'- gCUCAcucCCcUGAGGAgagugaggUGGGCCACCa -3' miRNA: 3'- -GAGUcu-GGuAUUCCUga------ACCCGGUGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 55664 | 0.68 | 0.883545 |
Target: 5'- uCUCcuGCCGUGGGGACU-GGGacuCCugCu -3' miRNA: 3'- -GAGucUGGUAUUCCUGAaCCC---GGugG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 52697 | 0.75 | 0.528868 |
Target: 5'- --aGGGCCGUGGugguGGACUUGGGCaugGCCa -3' miRNA: 3'- gagUCUGGUAUU----CCUGAACCCGg--UGG- -5' |
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27079 | 3' | -52.7 | NC_005832.1 | + | 32713 | 0.74 | 0.602694 |
Target: 5'- uCUCGGGCCugaagggAAGGACgUUGGGaCgGCCu -3' miRNA: 3'- -GAGUCUGGua-----UUCCUG-AACCC-GgUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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