Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2708 | 5' | -56.7 | NC_001491.2 | + | 85876 | 0.65 | 0.868781 |
Target: 5'- cGGCCGCcacacACGCCugcaucacggggggGUugaugGACCCGGCCAa- -3' miRNA: 3'- aUCGGCG-----UGUGG--------------CA-----UUGGGUCGGUac -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 95632 | 0.65 | 0.868781 |
Target: 5'- gAGCCGUAucaaaacuaaggccCACCGUuACCaCAGUgGUGu -3' miRNA: 3'- aUCGGCGU--------------GUGGCAuUGG-GUCGgUAC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 141669 | 0.66 | 0.863477 |
Target: 5'- cAGCCaGCGCAUCGacGCCguGCgCGUGc -3' miRNA: 3'- aUCGG-CGUGUGGCauUGGguCG-GUAC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 78539 | 0.66 | 0.863477 |
Target: 5'- gGGCCGUACaguuaACC--AGCUCAGCCAg- -3' miRNA: 3'- aUCGGCGUG-----UGGcaUUGGGUCGGUac -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 116346 | 0.66 | 0.855719 |
Target: 5'- -cGCCGCuggugcgcuacaACGCCGagggGGCCCgGGCCcgGg -3' miRNA: 3'- auCGGCG------------UGUGGCa---UUGGG-UCGGuaC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 85480 | 0.66 | 0.85335 |
Target: 5'- aGGCCGuCGCAUCGUGgauacuggaauuaaACCCAacacGCgCAUGa -3' miRNA: 3'- aUCGGC-GUGUGGCAU--------------UGGGU----CG-GUAC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 118635 | 0.66 | 0.847753 |
Target: 5'- gAGCUaGCACGCCaUGGCC-AGCCAg- -3' miRNA: 3'- aUCGG-CGUGUGGcAUUGGgUCGGUac -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 147616 | 0.66 | 0.847753 |
Target: 5'- aGGCCGCGCAagccgCGUcGCUgGGCCGc- -3' miRNA: 3'- aUCGGCGUGUg----GCAuUGGgUCGGUac -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 116846 | 0.66 | 0.847753 |
Target: 5'- -cGCCGCcgugGCCGgcuACCCGGCCc-- -3' miRNA: 3'- auCGGCGug--UGGCau-UGGGUCGGuac -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 49456 | 0.66 | 0.847753 |
Target: 5'- -cGCgGCGCAgCGgggAACCCcGCCGUc -3' miRNA: 3'- auCGgCGUGUgGCa--UUGGGuCGGUAc -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 24826 | 0.66 | 0.847753 |
Target: 5'- --uUCGUAC-CCG--ACCCAGCCGUGc -3' miRNA: 3'- aucGGCGUGuGGCauUGGGUCGGUAC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 13944 | 0.66 | 0.839588 |
Target: 5'- gUAGCCGCugguauagcGCGCCGggGCUggCGGCCuUGg -3' miRNA: 3'- -AUCGGCG---------UGUGGCauUGG--GUCGGuAC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 116820 | 0.66 | 0.839588 |
Target: 5'- aGGCCGC-CGCUGccGCggCCAGCCAg- -3' miRNA: 3'- aUCGGCGuGUGGCauUG--GGUCGGUac -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 141825 | 0.66 | 0.839588 |
Target: 5'- cAGCUccgGCG-ACCccGGCCCAGCCAUGc -3' miRNA: 3'- aUCGG---CGUgUGGcaUUGGGUCGGUAC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 146717 | 0.66 | 0.839588 |
Target: 5'- gGGCCGC-CGuCUccAGCCCGGCCGg- -3' miRNA: 3'- aUCGGCGuGU-GGcaUUGGGUCGGUac -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 21667 | 0.66 | 0.8371 |
Target: 5'- gGGCCGCgGCACUGgcGCUggucguucucaucaCAGCCGUc -3' miRNA: 3'- aUCGGCG-UGUGGCauUGG--------------GUCGGUAc -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 92211 | 0.66 | 0.831229 |
Target: 5'- uUGG-CGUACGCCGUAGCCacggGGCUAa- -3' miRNA: 3'- -AUCgGCGUGUGGCAUUGGg---UCGGUac -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 114589 | 0.66 | 0.831229 |
Target: 5'- cUGGCUGCGCcCCGUGuaccucGCCUgcGGCCGg- -3' miRNA: 3'- -AUCGGCGUGuGGCAU------UGGG--UCGGUac -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 126566 | 0.67 | 0.813963 |
Target: 5'- cGGCCGCAcCGCUGUAGCUgGGauCCAc- -3' miRNA: 3'- aUCGGCGU-GUGGCAUUGGgUC--GGUac -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 137622 | 0.67 | 0.805073 |
Target: 5'- cGGCCGC-CGCCGcGGCagCGGCCGc- -3' miRNA: 3'- aUCGGCGuGUGGCaUUGg-GUCGGUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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