miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2708 5' -56.7 NC_001491.2 + 147616 0.66 0.847753
Target:  5'- aGGCCGCGCAagccgCGUcGCUgGGCCGc- -3'
miRNA:   3'- aUCGGCGUGUg----GCAuUGGgUCGGUac -5'
2708 5' -56.7 NC_001491.2 + 146717 0.66 0.839588
Target:  5'- gGGCCGC-CGuCUccAGCCCGGCCGg- -3'
miRNA:   3'- aUCGGCGuGU-GGcaUUGGGUCGGUac -5'
2708 5' -56.7 NC_001491.2 + 141825 0.66 0.839588
Target:  5'- cAGCUccgGCG-ACCccGGCCCAGCCAUGc -3'
miRNA:   3'- aUCGG---CGUgUGGcaUUGGGUCGGUAC- -5'
2708 5' -56.7 NC_001491.2 + 141669 0.66 0.863477
Target:  5'- cAGCCaGCGCAUCGacGCCguGCgCGUGc -3'
miRNA:   3'- aUCGG-CGUGUGGCauUGGguCG-GUAC- -5'
2708 5' -56.7 NC_001491.2 + 141583 0.68 0.767997
Target:  5'- gGGCCcuGCGC-CCGU-ACCUGGCCcgGg -3'
miRNA:   3'- aUCGG--CGUGuGGCAuUGGGUCGGuaC- -5'
2708 5' -56.7 NC_001491.2 + 140359 0.7 0.616264
Target:  5'- gGGCCGCGCGCaaucaGUGcgcccgaucuCCCGGCCAc- -3'
miRNA:   3'- aUCGGCGUGUGg----CAUu---------GGGUCGGUac -5'
2708 5' -56.7 NC_001491.2 + 140166 0.69 0.688516
Target:  5'- -uGCCGCGCuCCGUGggggacuuuGCCgCGGUCGUGc -3'
miRNA:   3'- auCGGCGUGuGGCAU---------UGG-GUCGGUAC- -5'
2708 5' -56.7 NC_001491.2 + 140086 0.68 0.738858
Target:  5'- gGGCCGCcCGCgGaGGCCUGGCCGc- -3'
miRNA:   3'- aUCGGCGuGUGgCaUUGGGUCGGUac -5'
2708 5' -56.7 NC_001491.2 + 137622 0.67 0.805073
Target:  5'- cGGCCGC-CGCCGcGGCagCGGCCGc- -3'
miRNA:   3'- aUCGGCGuGUGGCaUUGg-GUCGGUac -5'
2708 5' -56.7 NC_001491.2 + 126566 0.67 0.813963
Target:  5'- cGGCCGCAcCGCUGUAGCUgGGauCCAc- -3'
miRNA:   3'- aUCGGCGU-GUGGCAUUGGgUC--GGUac -5'
2708 5' -56.7 NC_001491.2 + 124455 0.68 0.722951
Target:  5'- cAGCCGCGCGCaCGUGucugcagaaaACCCcgaagacacccccguGGCCGUu -3'
miRNA:   3'- aUCGGCGUGUG-GCAU----------UGGG---------------UCGGUAc -5'
2708 5' -56.7 NC_001491.2 + 120737 0.67 0.78682
Target:  5'- --aCCGUGCcaacuaguggguACCGUGACCCGGCCc-- -3'
miRNA:   3'- aucGGCGUG------------UGGCAUUGGGUCGGuac -5'
2708 5' -56.7 NC_001491.2 + 120652 1.06 0.003244
Target:  5'- aUAGCCGCACACCGUAACCCAGCCAUGc -3'
miRNA:   3'- -AUCGGCGUGUGGCAUUGGGUCGGUAC- -5'
2708 5' -56.7 NC_001491.2 + 118635 0.66 0.847753
Target:  5'- gAGCUaGCACGCCaUGGCC-AGCCAg- -3'
miRNA:   3'- aUCGG-CGUGUGGcAUUGGgUCGGUac -5'
2708 5' -56.7 NC_001491.2 + 118322 0.7 0.626615
Target:  5'- cAGCCgGCGuCcCCGgcACCCAGCCcgGc -3'
miRNA:   3'- aUCGG-CGU-GuGGCauUGGGUCGGuaC- -5'
2708 5' -56.7 NC_001491.2 + 116846 0.66 0.847753
Target:  5'- -cGCCGCcgugGCCGgcuACCCGGCCc-- -3'
miRNA:   3'- auCGGCGug--UGGCau-UGGGUCGGuac -5'
2708 5' -56.7 NC_001491.2 + 116820 0.66 0.839588
Target:  5'- aGGCCGC-CGCUGccGCggCCAGCCAg- -3'
miRNA:   3'- aUCGGCGuGUGGCauUG--GGUCGGUac -5'
2708 5' -56.7 NC_001491.2 + 116382 0.71 0.585315
Target:  5'- -cGgUGCGCGCCGUucuggugguGGCCCGGaCCGUGg -3'
miRNA:   3'- auCgGCGUGUGGCA---------UUGGGUC-GGUAC- -5'
2708 5' -56.7 NC_001491.2 + 116346 0.66 0.855719
Target:  5'- -cGCCGCuggugcgcuacaACGCCGagggGGCCCgGGCCcgGg -3'
miRNA:   3'- auCGGCG------------UGUGGCa---UUGGG-UCGGuaC- -5'
2708 5' -56.7 NC_001491.2 + 114589 0.66 0.831229
Target:  5'- cUGGCUGCGCcCCGUGuaccucGCCUgcGGCCGg- -3'
miRNA:   3'- -AUCGGCGUGuGGCAU------UGGG--UCGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.