miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27096 3' -53.1 NC_005832.1 + 6320 0.66 0.938391
Target:  5'- gGGUGGAcgGGAGGACaGAGGacagaaUGuCCCUAg -3'
miRNA:   3'- aCCACCU--UUUCCUG-CUUCa-----GC-GGGAU- -5'
27096 3' -53.1 NC_005832.1 + 56480 0.66 0.938391
Target:  5'- gGGUcuuauaGGAGGAGGA-GcAGUgGCCCUGg -3'
miRNA:   3'- aCCA------CCUUUUCCUgCuUCAgCGGGAU- -5'
27096 3' -53.1 NC_005832.1 + 76203 0.66 0.931626
Target:  5'- cUGGUGGGAAcccacccugguccuGuGGACGuAGGcCGCCCc- -3'
miRNA:   3'- -ACCACCUUU--------------U-CCUGC-UUCaGCGGGau -5'
27096 3' -53.1 NC_005832.1 + 7395 0.66 0.927797
Target:  5'- gGGUGGcu--GGACGAcgcggGGUCcguGCCCUu -3'
miRNA:   3'- aCCACCuuuuCCUGCU-----UCAG---CGGGAu -5'
27096 3' -53.1 NC_005832.1 + 4519 0.66 0.927797
Target:  5'- aGGUGGAAGGGcuccucuuuGGCGuuuGcUCGCCCg- -3'
miRNA:   3'- aCCACCUUUUC---------CUGCuu-C-AGCGGGau -5'
27096 3' -53.1 NC_005832.1 + 104170 0.66 0.922103
Target:  5'- --aUGGAu-AGGACaGAGGUUGCUCUGa -3'
miRNA:   3'- accACCUuuUCCUG-CUUCAGCGGGAU- -5'
27096 3' -53.1 NC_005832.1 + 100749 0.66 0.916143
Target:  5'- cGGcuaUGGGAGAGGcCGGAGUagaGUCCa- -3'
miRNA:   3'- aCC---ACCUUUUCCuGCUUCAg--CGGGau -5'
27096 3' -53.1 NC_005832.1 + 88161 0.66 0.916143
Target:  5'- aGGgGcGAAGAGGACGggG--GCCCg- -3'
miRNA:   3'- aCCaC-CUUUUCCUGCuuCagCGGGau -5'
27096 3' -53.1 NC_005832.1 + 102571 0.67 0.909919
Target:  5'- cGGUGGAGAA--ACGuaacuguuGUUGCCCUGu -3'
miRNA:   3'- aCCACCUUUUccUGCuu------CAGCGGGAU- -5'
27096 3' -53.1 NC_005832.1 + 54011 0.67 0.909919
Target:  5'- -uGUGGAGGAGGcUGggGcUGCCCg- -3'
miRNA:   3'- acCACCUUUUCCuGCuuCaGCGGGau -5'
27096 3' -53.1 NC_005832.1 + 66180 0.67 0.903433
Target:  5'- gGGUGGGAGggacagcuagacAGGugGAuGGaCGUCCUGa -3'
miRNA:   3'- aCCACCUUU------------UCCugCU-UCaGCGGGAU- -5'
27096 3' -53.1 NC_005832.1 + 18973 0.67 0.903433
Target:  5'- cUGGcGGuuGGGGACGAAGaCGUCUUu -3'
miRNA:   3'- -ACCaCCuuUUCCUGCUUCaGCGGGAu -5'
27096 3' -53.1 NC_005832.1 + 92030 0.67 0.903433
Target:  5'- gUGGUGGAcAAGGACuGcAAGgaucccgUGCCCg- -3'
miRNA:   3'- -ACCACCUuUUCCUG-C-UUCa------GCGGGau -5'
27096 3' -53.1 NC_005832.1 + 40829 0.67 0.889687
Target:  5'- gGGUcGAGAGGGGCGAcAGgauaGCCCa- -3'
miRNA:   3'- aCCAcCUUUUCCUGCU-UCag--CGGGau -5'
27096 3' -53.1 NC_005832.1 + 20696 0.67 0.889687
Target:  5'- cGGaucgGGAgcAGAGuACGAGGcCGCCCUGg -3'
miRNA:   3'- aCCa---CCU--UUUCcUGCUUCaGCGGGAU- -5'
27096 3' -53.1 NC_005832.1 + 92456 0.67 0.889687
Target:  5'- gUGGUGGAcgacGAGGACGAcgaggaccAGUCGgaCUAc -3'
miRNA:   3'- -ACCACCUu---UUCCUGCU--------UCAGCggGAU- -5'
27096 3' -53.1 NC_005832.1 + 89668 0.67 0.889687
Target:  5'- aGGUGGAcucgaAGGGGACGAcccUCaCCCUGu -3'
miRNA:   3'- aCCACCU-----UUUCCUGCUuc-AGcGGGAU- -5'
27096 3' -53.1 NC_005832.1 + 79972 0.67 0.889687
Target:  5'- aGGUGGAGgaggGAGGugGggGaC-CCCa- -3'
miRNA:   3'- aCCACCUU----UUCCugCuuCaGcGGGau -5'
27096 3' -53.1 NC_005832.1 + 72530 0.67 0.874936
Target:  5'- gGGUGGAcccGGGGGuCccuuGUCGCCCUu -3'
miRNA:   3'- aCCACCU---UUUCCuGcuu-CAGCGGGAu -5'
27096 3' -53.1 NC_005832.1 + 54697 0.68 0.867981
Target:  5'- gUGGUGGGcaccuacuccaagguGGGGACGggGUucgaCGCCUg- -3'
miRNA:   3'- -ACCACCUu--------------UUCCUGCuuCA----GCGGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.