Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2710 | 3' | -54.2 | NC_001491.2 | + | 122742 | 0.66 | 0.967211 |
Target: 5'- cCCcCAcCCCACCcuUCCCauaGCUcUCCCu -3' miRNA: 3'- -GGaGU-GGGUGGuuAGGGa--UGGuAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 128525 | 0.66 | 0.948856 |
Target: 5'- aCCgCACCCACCAacagggucugggGUCCUgugGCCugcCUCa -3' miRNA: 3'- -GGaGUGGGUGGU------------UAGGGa--UGGua-GGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 56487 | 0.66 | 0.95687 |
Target: 5'- aCCgcuagaggCGCUguuuuUCGAUCCgCUGCCAUCCCc -3' miRNA: 3'- -GGa-------GUGGgu---GGUUAGG-GAUGGUAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 49656 | 0.66 | 0.960537 |
Target: 5'- cCCcCAUCCGCCGG--CCUGCCcgCuCCa -3' miRNA: 3'- -GGaGUGGGUGGUUagGGAUGGuaG-GG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 54868 | 0.66 | 0.963982 |
Target: 5'- gCCUCacacgaugACCCAuCCAGguuugCUgaGCUAUCCCg -3' miRNA: 3'- -GGAG--------UGGGU-GGUUa----GGgaUGGUAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 147783 | 0.66 | 0.963982 |
Target: 5'- gCCgcuGgCCGCCAGcUCCCcgaagcgcgcGCCGUCCCg -3' miRNA: 3'- -GGag-UgGGUGGUU-AGGGa---------UGGUAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 116542 | 0.66 | 0.963982 |
Target: 5'- cCCUCuCCCGCCug-CCCUcCCGaggcgcugugcUCCa -3' miRNA: 3'- -GGAGuGGGUGGuuaGGGAuGGU-----------AGGg -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 33733 | 0.66 | 0.963982 |
Target: 5'- aUCUgGUCCACCGccuccauuUCCCUGuCCGUCCa -3' miRNA: 3'- -GGAgUGGGUGGUu-------AGGGAU-GGUAGGg -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 30036 | 0.66 | 0.963982 |
Target: 5'- aCCUCGCCagCAUCAAccUCCCcaaaugccucGCCAUaCCCc -3' miRNA: 3'- -GGAGUGG--GUGGUU--AGGGa---------UGGUA-GGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 107371 | 0.66 | 0.967211 |
Target: 5'- gCUCACCUACgGAcaCCCUucGCCccuGUCUCg -3' miRNA: 3'- gGAGUGGGUGgUUa-GGGA--UGG---UAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 141738 | 0.66 | 0.967211 |
Target: 5'- gCCg--UCCACCAGccCCCUcaucCCGUCCCu -3' miRNA: 3'- -GGaguGGGUGGUUa-GGGAu---GGUAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 138457 | 0.66 | 0.967211 |
Target: 5'- gCUCGUCCGCgGGUUCCUcCUcgCCCu -3' miRNA: 3'- gGAGUGGGUGgUUAGGGAuGGuaGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 125163 | 0.67 | 0.924709 |
Target: 5'- gCUCGCUCGCCGccgcaAUgCCaACCcgCCCc -3' miRNA: 3'- gGAGUGGGUGGU-----UAgGGaUGGuaGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 116189 | 0.67 | 0.924709 |
Target: 5'- uCCUCGCCCGgCGGcgagCCCUucuCCGgcUCCg -3' miRNA: 3'- -GGAGUGGGUgGUUa---GGGAu--GGU--AGGg -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 118370 | 0.67 | 0.928449 |
Target: 5'- cCCUCGgCCGCCGgcagcggcgGUCCuccuaccccggcggCUGCCG-CCCa -3' miRNA: 3'- -GGAGUgGGUGGU---------UAGG--------------GAUGGUaGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 111492 | 0.67 | 0.939911 |
Target: 5'- cCCUUugUCACgGAUCUC-AUCGUCCa -3' miRNA: 3'- -GGAGugGGUGgUUAGGGaUGGUAGGg -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 116853 | 0.67 | 0.944502 |
Target: 5'- aCUCACUCGCCGccguggCCggCUACCcggCCCa -3' miRNA: 3'- gGAGUGGGUGGUua----GG--GAUGGua-GGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 115512 | 0.67 | 0.944502 |
Target: 5'- gCUCACCUucgauccCCAggCCCUggccACCAUCgCg -3' miRNA: 3'- gGAGUGGGu------GGUuaGGGA----UGGUAGgG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 125530 | 0.67 | 0.944502 |
Target: 5'- cCCgCGCCCGCuCGGUCCacgGCCG-CCg -3' miRNA: 3'- -GGaGUGGGUG-GUUAGGga-UGGUaGGg -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 121285 | 0.68 | 0.913375 |
Target: 5'- aCC-CACCCAUCAAUUaguggGCCcUCCCc -3' miRNA: 3'- -GGaGUGGGUGGUUAGgga--UGGuAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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