Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2710 | 3' | -54.2 | NC_001491.2 | + | 1793 | 0.7 | 0.826369 |
Target: 5'- gCUCGCCguCCAcgCCCgcgGCCGcucugCCCc -3' miRNA: 3'- gGAGUGGguGGUuaGGGa--UGGUa----GGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 3112 | 0.68 | 0.894597 |
Target: 5'- aCCUCAucUCCACCAgggagGUCUaCUACCcUUCCg -3' miRNA: 3'- -GGAGU--GGGUGGU-----UAGG-GAUGGuAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 5041 | 0.7 | 0.842949 |
Target: 5'- aCCaaaaACCUACCAAUgcgcaccagagaCCCUAUCAUCUCu -3' miRNA: 3'- -GGag--UGGGUGGUUA------------GGGAUGGUAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 24206 | 0.69 | 0.887873 |
Target: 5'- uCCUCACuUCAUCGAUCuuacacauugaCCUGCUAaCCCg -3' miRNA: 3'- -GGAGUG-GGUGGUUAG-----------GGAUGGUaGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 30036 | 0.66 | 0.963982 |
Target: 5'- aCCUCGCCagCAUCAAccUCCCcaaaugccucGCCAUaCCCc -3' miRNA: 3'- -GGAGUGG--GUGGUU--AGGGa---------UGGUA-GGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 33733 | 0.66 | 0.963982 |
Target: 5'- aUCUgGUCCACCGccuccauuUCCCUGuCCGUCCa -3' miRNA: 3'- -GGAgUGGGUGGUu-------AGGGAU-GGUAGGg -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 49656 | 0.66 | 0.960537 |
Target: 5'- cCCcCAUCCGCCGG--CCUGCCcgCuCCa -3' miRNA: 3'- -GGaGUGGGUGGUUagGGAUGGuaG-GG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 54868 | 0.66 | 0.963982 |
Target: 5'- gCCUCacacgaugACCCAuCCAGguuugCUgaGCUAUCCCg -3' miRNA: 3'- -GGAG--------UGGGU-GGUUa----GGgaUGGUAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 56487 | 0.66 | 0.95687 |
Target: 5'- aCCgcuagaggCGCUguuuuUCGAUCCgCUGCCAUCCCc -3' miRNA: 3'- -GGa-------GUGGgu---GGUUAGG-GAUGGUAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 70265 | 0.71 | 0.772641 |
Target: 5'- -aUCAgCCGCCAAaucUCCCUGCUGUUUCc -3' miRNA: 3'- ggAGUgGGUGGUU---AGGGAUGGUAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 73990 | 0.68 | 0.900452 |
Target: 5'- cCCUCGcuCCCGCCGcgCCgCcGCCGcagcagcccucgcUCCCg -3' miRNA: 3'- -GGAGU--GGGUGGUuaGG-GaUGGU-------------AGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 74054 | 0.68 | 0.900452 |
Target: 5'- cCCUCGcuCCCGCCGcgCCgCcGCCGcagcagcccucgcUCCCg -3' miRNA: 3'- -GGAGU--GGGUGGUuaGG-GaUGGU-------------AGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 74118 | 0.68 | 0.900452 |
Target: 5'- cCCUCGcuCCCGCCGcgCCgCcGCCGcagcagcccucgcUCCCg -3' miRNA: 3'- -GGAGU--GGGUGGUuaGG-GaUGGU-------------AGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 74182 | 0.68 | 0.900452 |
Target: 5'- cCCUCGcuCCCGCCGcgCCgCcGCCGcagcagcccucgcUCCCg -3' miRNA: 3'- -GGAGU--GGGUGGUuaGG-GaUGGU-------------AGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 74246 | 0.68 | 0.900452 |
Target: 5'- cCCUCGcuCCCGCCGcgCCgCcGCCGcagcagcccucgcUCCCg -3' miRNA: 3'- -GGAGU--GGGUGGUuaGG-GaUGGU-------------AGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 78249 | 0.68 | 0.907351 |
Target: 5'- cCCUCACCCGCagggaggaugaGAUCUgcgUACCGUCUa -3' miRNA: 3'- -GGAGUGGGUGg----------UUAGGg--AUGGUAGGg -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 82044 | 0.68 | 0.894597 |
Target: 5'- --cCACCCACCAA-CCgUACCAauaaCCa -3' miRNA: 3'- ggaGUGGGUGGUUaGGgAUGGUag--GG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 82550 | 0.68 | 0.894597 |
Target: 5'- uCCUCGCCCACaGAUCCUagGCgCAgcuugUCCUc -3' miRNA: 3'- -GGAGUGGGUGgUUAGGGa-UG-GU-----AGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 99148 | 0.7 | 0.81781 |
Target: 5'- cCCUCuGCCCA-CAGUCUCUgucgagcaagcuGCCGUUCCu -3' miRNA: 3'- -GGAG-UGGGUgGUUAGGGA------------UGGUAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 107371 | 0.66 | 0.967211 |
Target: 5'- gCUCACCUACgGAcaCCCUucGCCccuGUCUCg -3' miRNA: 3'- gGAGUGGGUGgUUa-GGGA--UGG---UAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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