Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2710 | 3' | -54.2 | NC_001491.2 | + | 123791 | 1.14 | 0.002434 |
Target: 5'- aCCUCACCCACCAAUCCCUACCAUCCCc -3' miRNA: 3'- -GGAGUGGGUGGUUAGGGAUGGUAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 125311 | 0.75 | 0.541711 |
Target: 5'- gCCUuuaCACCCACCAccgccuagCCCUGCacaaCAUCCCu -3' miRNA: 3'- -GGA---GUGGGUGGUua------GGGAUG----GUAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 116081 | 0.74 | 0.612615 |
Target: 5'- cCCUCGuCCCAcucCCAGUCCCc-CCAgcacUCCCa -3' miRNA: 3'- -GGAGU-GGGU---GGUUAGGGauGGU----AGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 117910 | 0.74 | 0.633111 |
Target: 5'- cCCgUCGgCCGCCGGcucUCCCggGCCGUCCUc -3' miRNA: 3'- -GG-AGUgGGUGGUU---AGGGa-UGGUAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 112274 | 0.72 | 0.74784 |
Target: 5'- uCC-CGCCCACCAaucgcauucaaacggGUCCCcaUGCUAUaCCCc -3' miRNA: 3'- -GGaGUGGGUGGU---------------UAGGG--AUGGUA-GGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 70265 | 0.71 | 0.772641 |
Target: 5'- -aUCAgCCGCCAAaucUCCCUGCUGUUUCc -3' miRNA: 3'- ggAGUgGGUGGUU---AGGGAUGGUAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 114917 | 0.71 | 0.781962 |
Target: 5'- aCCUCAgCCGCgCGGUCCUcACC-UCCa -3' miRNA: 3'- -GGAGUgGGUG-GUUAGGGaUGGuAGGg -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 122983 | 0.71 | 0.800191 |
Target: 5'- uCCgCGCCCGCC---CCCguccCCGUCCCc -3' miRNA: 3'- -GGaGUGGGUGGuuaGGGau--GGUAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 140781 | 0.71 | 0.800191 |
Target: 5'- aCC-CACUCGCCAAcccaCCCaUACCA-CCCa -3' miRNA: 3'- -GGaGUGGGUGGUUa---GGG-AUGGUaGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 116132 | 0.7 | 0.809081 |
Target: 5'- aCC-CugCCGCCccuguggCCC-ACCGUCCCc -3' miRNA: 3'- -GGaGugGGUGGuua----GGGaUGGUAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 99148 | 0.7 | 0.81781 |
Target: 5'- cCCUCuGCCCA-CAGUCUCUgucgagcaagcuGCCGUUCCu -3' miRNA: 3'- -GGAG-UGGGUgGUUAGGGA------------UGGUAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 119840 | 0.7 | 0.826369 |
Target: 5'- --aCGCCCACCuuUCCCccuccCCcUCCCa -3' miRNA: 3'- ggaGUGGGUGGuuAGGGau---GGuAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 124875 | 0.7 | 0.826369 |
Target: 5'- gCUCAgCUACUccgCCCUGCCGcugCCCa -3' miRNA: 3'- gGAGUgGGUGGuuaGGGAUGGUa--GGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 1793 | 0.7 | 0.826369 |
Target: 5'- gCUCGCCguCCAcgCCCgcgGCCGcucugCCCc -3' miRNA: 3'- gGAGUGGguGGUuaGGGa--UGGUa----GGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 149623 | 0.7 | 0.842949 |
Target: 5'- aCC-CGCCCAUCAAcccgCCCaucaACCcgCCCa -3' miRNA: 3'- -GGaGUGGGUGGUUa---GGGa---UGGuaGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 149803 | 0.7 | 0.842949 |
Target: 5'- aCC-CGCCCAUCAAcccgCCCaucaACCcgCCCa -3' miRNA: 3'- -GGaGUGGGUGGUUa---GGGa---UGGuaGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 149767 | 0.7 | 0.842949 |
Target: 5'- aCC-CGCCCAUCAAcccgCCCaucaACCcgCCCa -3' miRNA: 3'- -GGaGUGGGUGGUUa---GGGa---UGGuaGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 149407 | 0.7 | 0.842949 |
Target: 5'- aCC-CGCCCAUCAAcccgCCCaucaACCcgCCCa -3' miRNA: 3'- -GGaGUGGGUGGUUa---GGGa---UGGuaGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 149695 | 0.7 | 0.842949 |
Target: 5'- aCC-CGCCCAUCAAcccgCCCaucaACCcgCCCa -3' miRNA: 3'- -GGaGUGGGUGGUUa---GGGa---UGGuaGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 149587 | 0.7 | 0.842949 |
Target: 5'- aCC-CGCCCAUCAAcccgCCCaucaACCcgCCCa -3' miRNA: 3'- -GGaGUGGGUGGUUa---GGGa---UGGuaGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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