Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2710 | 5' | -54.9 | NC_001491.2 | + | 123757 | 1.12 | 0.002391 |
Target: 5'- aCGGAGAGAGAGAAAACCGGCGAGGCCu -3' miRNA: 3'- -GCCUCUCUCUCUUUUGGCCGCUCCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 119088 | 0.79 | 0.306603 |
Target: 5'- cCGGGGAGAGcguuAGAGAACgGgGCGAGuGCCa -3' miRNA: 3'- -GCCUCUCUC----UCUUUUGgC-CGCUC-CGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 1282 | 0.76 | 0.443254 |
Target: 5'- gCGGGGGGAGAuGggGGCCaggcucucucucgGGCGcGGGCCc -3' miRNA: 3'- -GCCUCUCUCU-CuuUUGG-------------CCGC-UCCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 139303 | 0.76 | 0.47183 |
Target: 5'- nGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3' miRNA: 3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 139276 | 0.76 | 0.47183 |
Target: 5'- nGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3' miRNA: 3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 139223 | 0.76 | 0.47183 |
Target: 5'- gGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3' miRNA: 3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 139330 | 0.76 | 0.47183 |
Target: 5'- gGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3' miRNA: 3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 139169 | 0.76 | 0.47183 |
Target: 5'- nGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3' miRNA: 3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 139115 | 0.76 | 0.47183 |
Target: 5'- nGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3' miRNA: 3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 139061 | 0.76 | 0.47183 |
Target: 5'- nGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3' miRNA: 3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 139142 | 0.76 | 0.47183 |
Target: 5'- nGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3' miRNA: 3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 139088 | 0.76 | 0.47183 |
Target: 5'- nGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3' miRNA: 3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 139034 | 0.76 | 0.47183 |
Target: 5'- nGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3' miRNA: 3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 139196 | 0.76 | 0.47183 |
Target: 5'- nGGAGAGcgguAGGGGAGGCCGaGCGGGGg- -3' miRNA: 3'- gCCUCUC----UCUCUUUUGGC-CGCUCCgg -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 9732 | 0.75 | 0.526642 |
Target: 5'- cCGGAGAGAGGGAGAuuguGCUGGCcaccaGAuauuaccuauuccaGGCCa -3' miRNA: 3'- -GCCUCUCUCUCUUU----UGGCCG-----CU--------------CCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 44426 | 0.75 | 0.536515 |
Target: 5'- uGGGGcAGAGGGGGAGCgGGUGgaagagugggaggaGGGCCg -3' miRNA: 3'- gCCUC-UCUCUCUUUUGgCCGC--------------UCCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 44551 | 0.75 | 0.536515 |
Target: 5'- uGGGGcAGAGGGGGAGCgGGUGgaagagugggaggaGGGCCg -3' miRNA: 3'- gCCUC-UCUCUCUUUUGgCCGC--------------UCCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 44488 | 0.75 | 0.536515 |
Target: 5'- uGGGGcAGAGGGGGAGCgGGUGgaagagugggaggaGGGCCg -3' miRNA: 3'- gCCUC-UCUCUCUUUUGgCCGC--------------UCCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 112995 | 0.75 | 0.539489 |
Target: 5'- gGGGGuGAGAcGcgGGCUGGgGGGGCCa -3' miRNA: 3'- gCCUCuCUCU-CuuUUGGCCgCUCCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 88698 | 0.74 | 0.578605 |
Target: 5'- gCGGAGAGGcGAGAGAAcgguuagacCCGGCcuccgugGAGGCUu -3' miRNA: 3'- -GCCUCUCU-CUCUUUU---------GGCCG-------CUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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