Results 1 - 20 of 60 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2710 | 5' | -54.9 | NC_001491.2 | + | 1282 | 0.76 | 0.443254 |
Target: 5'- gCGGGGGGAGAuGggGGCCaggcucucucucgGGCGcGGGCCc -3' miRNA: 3'- -GCCUCUCUCU-CuuUUGG-------------CCGC-UCCGG- -5' |
|||||||
2710 | 5' | -54.9 | NC_001491.2 | + | 1498 | 0.69 | 0.815188 |
Target: 5'- uGGAGAuGGAGAcaGAGgaGGCGcGGCCc -3' miRNA: 3'- gCCUCUcUCUCU--UUUggCCGCuCCGG- -5' |
|||||||
2710 | 5' | -54.9 | NC_001491.2 | + | 5763 | 0.66 | 0.933334 |
Target: 5'- --aAGAGcGAGc-GGCCGGCGuuuGGCCa -3' miRNA: 3'- gccUCUCuCUCuuUUGGCCGCu--CCGG- -5' |
|||||||
2710 | 5' | -54.9 | NC_001491.2 | + | 9732 | 0.75 | 0.526642 |
Target: 5'- cCGGAGAGAGGGAGAuuguGCUGGCcaccaGAuauuaccuauuccaGGCCa -3' miRNA: 3'- -GCCUCUCUCUCUUU----UGGCCG-----CU--------------CCGG- -5' |
|||||||
2710 | 5' | -54.9 | NC_001491.2 | + | 16969 | 0.69 | 0.856312 |
Target: 5'- cCGGAGAGugcuauGAGggGcUCuGCGGGGCg -3' miRNA: 3'- -GCCUCUCu-----CUCuuUuGGcCGCUCCGg -5' |
|||||||
2710 | 5' | -54.9 | NC_001491.2 | + | 18973 | 0.67 | 0.921719 |
Target: 5'- cCGGAGGGcGAGAcucgcgaGGGCCGuGUGugauaacGGGCCc -3' miRNA: 3'- -GCCUCUCuCUCU-------UUUGGC-CGC-------UCCGG- -5' |
|||||||
2710 | 5' | -54.9 | NC_001491.2 | + | 19537 | 0.71 | 0.725566 |
Target: 5'- uGGGGAGGacagcaaaacuguccGGGAAAACCGGaGGGGUUg -3' miRNA: 3'- gCCUCUCU---------------CUCUUUUGGCCgCUCCGG- -5' |
|||||||
2710 | 5' | -54.9 | NC_001491.2 | + | 20150 | 0.67 | 0.898951 |
Target: 5'- uGGAGAauuggcGGGuGGAuuacAACCGGCGGGGg- -3' miRNA: 3'- gCCUCU------CUCuCUU----UUGGCCGCUCCgg -5' |
|||||||
2710 | 5' | -54.9 | NC_001491.2 | + | 27593 | 0.67 | 0.902771 |
Target: 5'- uGGGGGGAGccauucucacuAAAgCGcGCGGGGCCg -3' miRNA: 3'- gCCUCUCUCucu--------UUUgGC-CGCUCCGG- -5' |
|||||||
2710 | 5' | -54.9 | NC_001491.2 | + | 44426 | 0.75 | 0.536515 |
Target: 5'- uGGGGcAGAGGGGGAGCgGGUGgaagagugggaggaGGGCCg -3' miRNA: 3'- gCCUC-UCUCUCUUUUGgCCGC--------------UCCGG- -5' |
|||||||
2710 | 5' | -54.9 | NC_001491.2 | + | 44488 | 0.75 | 0.536515 |
Target: 5'- uGGGGcAGAGGGGGAGCgGGUGgaagagugggaggaGGGCCg -3' miRNA: 3'- gCCUC-UCUCUCUUUUGgCCGC--------------UCCGG- -5' |
|||||||
2710 | 5' | -54.9 | NC_001491.2 | + | 44551 | 0.75 | 0.536515 |
Target: 5'- uGGGGcAGAGGGGGAGCgGGUGgaagagugggaggaGGGCCg -3' miRNA: 3'- gCCUC-UCUCUCUUUUGgCCGC--------------UCCGG- -5' |
|||||||
2710 | 5' | -54.9 | NC_001491.2 | + | 47933 | 0.67 | 0.922823 |
Target: 5'- -cGAGGGGGAGGccuAGACC--UGAGGCCc -3' miRNA: 3'- gcCUCUCUCUCU---UUUGGccGCUCCGG- -5' |
|||||||
2710 | 5' | -54.9 | NC_001491.2 | + | 53231 | 0.73 | 0.620341 |
Target: 5'- aCGGAG-GcGGGAAGcCCGGCGucgggaGGGCCg -3' miRNA: 3'- -GCCUCuCuCUCUUUuGGCCGC------UCCGG- -5' |
|||||||
2710 | 5' | -54.9 | NC_001491.2 | + | 66493 | 0.67 | 0.928198 |
Target: 5'- aCGGAGAGAGgcuggcauAGAGGggcacacguACCuGC-AGGCCa -3' miRNA: 3'- -GCCUCUCUC--------UCUUU---------UGGcCGcUCCGG- -5' |
|||||||
2710 | 5' | -54.9 | NC_001491.2 | + | 68156 | 0.67 | 0.905271 |
Target: 5'- cCGGAGgAGGGGGAAGAUacgaacggGGCGcgcuaaacGGCCa -3' miRNA: 3'- -GCCUC-UCUCUCUUUUGg-------CCGCu-------CCGG- -5' |
|||||||
2710 | 5' | -54.9 | NC_001491.2 | + | 79525 | 0.71 | 0.721615 |
Target: 5'- gGGGGAGGGGGAuguuACCguugaugaGGCGuggcauGGCCa -3' miRNA: 3'- gCCUCUCUCUCUuu--UGG--------CCGCu-----CCGG- -5' |
|||||||
2710 | 5' | -54.9 | NC_001491.2 | + | 88698 | 0.74 | 0.578605 |
Target: 5'- gCGGAGAGGcGAGAGAAcgguuagacCCGGCcuccgugGAGGCUu -3' miRNA: 3'- -GCCUCUCU-CUCUUUU---------GGCCG-------CUCCGG- -5' |
|||||||
2710 | 5' | -54.9 | NC_001491.2 | + | 90386 | 0.68 | 0.863957 |
Target: 5'- aGGAcGGAGGGAGGGCCGcuGCGAGaaaGUCu -3' miRNA: 3'- gCCUcUCUCUCUUUUGGC--CGCUC---CGG- -5' |
|||||||
2710 | 5' | -54.9 | NC_001491.2 | + | 94148 | 0.66 | 0.942438 |
Target: 5'- uCGGAGAuaugcccGGGGGAAAgagugcACCG-CGGuGGCCg -3' miRNA: 3'- -GCCUCU-------CUCUCUUU------UGGCcGCU-CCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home