Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2710 | 5' | -54.9 | NC_001491.2 | + | 123757 | 1.12 | 0.002391 |
Target: 5'- aCGGAGAGAGAGAAAACCGGCGAGGCCu -3' miRNA: 3'- -GCCUCUCUCUCUUUUGGCCGCUCCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 18973 | 0.67 | 0.921719 |
Target: 5'- cCGGAGGGcGAGAcucgcgaGGGCCGuGUGugauaacGGGCCc -3' miRNA: 3'- -GCCUCUCuCUCU-------UUUGGC-CGC-------UCCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 148958 | 0.67 | 0.917209 |
Target: 5'- gCGGAGGGccuGGGccacGCCGGgGcucGGGCCg -3' miRNA: 3'- -GCCUCUCu--CUCuuu-UGGCCgC---UCCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 68156 | 0.67 | 0.905271 |
Target: 5'- cCGGAGgAGGGGGAAGAUacgaacggGGCGcgcuaaacGGCCa -3' miRNA: 3'- -GCCUC-UCUCUCUUUUGg-------CCGCu-------CCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 123534 | 0.67 | 0.905271 |
Target: 5'- uGGAGAGGGAGcuugcGGCCG-CGGGcGCg -3' miRNA: 3'- gCCUCUCUCUCuu---UUGGCcGCUC-CGg -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 27593 | 0.67 | 0.902771 |
Target: 5'- uGGGGGGAGccauucucacuAAAgCGcGCGGGGCCg -3' miRNA: 3'- gCCUCUCUCucu--------UUUgGC-CGCUCCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 20150 | 0.67 | 0.898951 |
Target: 5'- uGGAGAauuggcGGGuGGAuuacAACCGGCGGGGg- -3' miRNA: 3'- gCCUCU------CUCuCUU----UUGGCCGCUCCgg -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 137099 | 0.67 | 0.898951 |
Target: 5'- cCGGuGAuGGGGGAGACgGGCacccuGAGGCa -3' miRNA: 3'- -GCCuCUcUCUCUUUUGgCCG-----CUCCGg -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 146730 | 0.68 | 0.892399 |
Target: 5'- uCGuAGAGGGAGAGGGCCGccgucuccaGCccGGCCg -3' miRNA: 3'- -GCcUCUCUCUCUUUUGGC---------CGcuCCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 147938 | 0.67 | 0.922823 |
Target: 5'- uCGGAccaGAGGGGcucgcgccGAGAGCCGcCGGGGCg -3' miRNA: 3'- -GCCU---CUCUCU--------CUUUUGGCcGCUCCGg -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 47933 | 0.67 | 0.922823 |
Target: 5'- -cGAGGGGGAGGccuAGACC--UGAGGCCc -3' miRNA: 3'- gcCUCUCUCUCU---UUUGGccGCUCCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 66493 | 0.67 | 0.928198 |
Target: 5'- aCGGAGAGAGgcuggcauAGAGGggcacacguACCuGC-AGGCCa -3' miRNA: 3'- -GCCUCUCUC--------UCUUU---------UGGcCGcUCCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 145455 | 0.66 | 0.946017 |
Target: 5'- cCGGAGGGAG-GAGgccuccucccgggcGGCUGggaGCGGGcGCCg -3' miRNA: 3'- -GCCUCUCUCuCUU--------------UUGGC---CGCUC-CGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 112816 | 0.66 | 0.942894 |
Target: 5'- uGGGGAGGGGGAAAAUgGGgGAa--- -3' miRNA: 3'- gCCUCUCUCUCUUUUGgCCgCUccgg -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 94148 | 0.66 | 0.942438 |
Target: 5'- uCGGAGAuaugcccGGGGGAAAgagugcACCG-CGGuGGCCg -3' miRNA: 3'- -GCCUCU-------CUCUCUUU------UGGCcGCU-CCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 147004 | 0.66 | 0.938232 |
Target: 5'- -uGAGGGcugcuGGGAccGAGUCGGUGGGGCCa -3' miRNA: 3'- gcCUCUCu----CUCU--UUUGGCCGCUCCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 117878 | 0.66 | 0.933334 |
Target: 5'- cCGGAG-GGGAucgc-CCGGCcgcuGGGGCCg -3' miRNA: 3'- -GCCUCuCUCUcuuuuGGCCG----CUCCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 5763 | 0.66 | 0.933334 |
Target: 5'- --aAGAGcGAGc-GGCCGGCGuuuGGCCa -3' miRNA: 3'- gccUCUCuCUCuuUUGGCCGCu--CCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 116260 | 0.66 | 0.933334 |
Target: 5'- uGGucGGGGGGAuguUgGGgGAGGCCg -3' miRNA: 3'- gCCucUCUCUCUuuuGgCCgCUCCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 148136 | 0.66 | 0.933334 |
Target: 5'- gCGGAGcccaggcgcaGGcAGAGGuacucgacgcAGCCGGUGAaGGCCa -3' miRNA: 3'- -GCCUC----------UC-UCUCUu---------UUGGCCGCU-CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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