miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27101 5' -61.5 NC_005832.1 + 20298 0.66 0.596575
Target:  5'- aGCCUuaaacucgucCAUGGUCCUGGCGuucUGAGGa -3'
miRNA:   3'- -UGGA----------GUGCCGGGACCGCcacACUCCg -5'
27101 5' -61.5 NC_005832.1 + 67233 0.66 0.587521
Target:  5'- uCCUCA-GGCCCUGGgagagggGGcugccucucuacccgGUGAGGCu -3'
miRNA:   3'- uGGAGUgCCGGGACCg------CCa--------------CACUCCG- -5'
27101 5' -61.5 NC_005832.1 + 62017 0.66 0.586516
Target:  5'- aGCCUC-CGGgC-UGGagGGUGUGGGGg -3'
miRNA:   3'- -UGGAGuGCCgGgACCg-CCACACUCCg -5'
27101 5' -61.5 NC_005832.1 + 28054 0.66 0.57649
Target:  5'- -gCUCA-GGCCCUguccagGGUGGUGgggaccaaGAGGCc -3'
miRNA:   3'- ugGAGUgCCGGGA------CCGCCACa-------CUCCG- -5'
27101 5' -61.5 NC_005832.1 + 7099 0.66 0.574489
Target:  5'- gUCUCA-GGuCCCcGGCGGUGaccagcguagagGAGGCu -3'
miRNA:   3'- uGGAGUgCC-GGGaCCGCCACa-----------CUCCG- -5'
27101 5' -61.5 NC_005832.1 + 53990 0.66 0.55656
Target:  5'- cCCUCu---CCCUGGCGGUGccgugagcggGAGGUg -3'
miRNA:   3'- uGGAGugccGGGACCGCCACa---------CUCCG- -5'
27101 5' -61.5 NC_005832.1 + 67018 0.66 0.55656
Target:  5'- cGCUgCGagGGCCCUGGCGGcGgccGuGGCg -3'
miRNA:   3'- -UGGaGUg-CCGGGACCGCCaCa--CuCCG- -5'
27101 5' -61.5 NC_005832.1 + 19837 0.66 0.546669
Target:  5'- cCCUgACGGUCUUGGCcGGUuucgGAGGa -3'
miRNA:   3'- uGGAgUGCCGGGACCG-CCAca--CUCCg -5'
27101 5' -61.5 NC_005832.1 + 94915 0.66 0.546669
Target:  5'- --gUCGCaGGCCCcugccccGGCGGUGaGGGGUa -3'
miRNA:   3'- uggAGUG-CCGGGa------CCGCCACaCUCCG- -5'
27101 5' -61.5 NC_005832.1 + 87379 0.66 0.536834
Target:  5'- cGCCUugaCAUGGCCCUcaGGCucuccaGG-GUGAGGg -3'
miRNA:   3'- -UGGA---GUGCCGGGA--CCG------CCaCACUCCg -5'
27101 5' -61.5 NC_005832.1 + 39478 0.66 0.535854
Target:  5'- gGCCcCugGGCCCUGGUcgccgucguccccGGgg-GGGGUc -3'
miRNA:   3'- -UGGaGugCCGGGACCG-------------CCacaCUCCG- -5'
27101 5' -61.5 NC_005832.1 + 62301 0.67 0.517356
Target:  5'- uCCUCGgGaGCCUUGGCGuaa-GAGGCa -3'
miRNA:   3'- uGGAGUgC-CGGGACCGCcacaCUCCG- -5'
27101 5' -61.5 NC_005832.1 + 47724 0.67 0.517356
Target:  5'- uGCCUgACGGgCaUGGCGGccGcGAGGCc -3'
miRNA:   3'- -UGGAgUGCCgGgACCGCCa-CaCUCCG- -5'
27101 5' -61.5 NC_005832.1 + 38072 0.67 0.511567
Target:  5'- ---gUACGGCCCUGGCacgccugggauguaaGGcaucacagUGUGAGGUa -3'
miRNA:   3'- uggaGUGCCGGGACCG---------------CC--------ACACUCCG- -5'
27101 5' -61.5 NC_005832.1 + 10241 0.67 0.501979
Target:  5'- gACCUggcUAUGGCCUgGGCGGUcucgguguaauuccaGUGGGGg -3'
miRNA:   3'- -UGGA---GUGCCGGGaCCGCCA---------------CACUCCg -5'
27101 5' -61.5 NC_005832.1 + 32205 0.67 0.498166
Target:  5'- aACCcgGCGuGgCCUGG-GGUGUGGGGUc -3'
miRNA:   3'- -UGGagUGC-CgGGACCgCCACACUCCG- -5'
27101 5' -61.5 NC_005832.1 + 43812 0.68 0.47
Target:  5'- gGCC-CACggGGCCCUGcCGGUG-GuGGCc -3'
miRNA:   3'- -UGGaGUG--CCGGGACcGCCACaCuCCG- -5'
27101 5' -61.5 NC_005832.1 + 75911 0.68 0.460793
Target:  5'- gGCCacCAgGGCCCUGGCcaaggagaGGggaGAGGCa -3'
miRNA:   3'- -UGGa-GUgCCGGGACCG--------CCacaCUCCG- -5'
27101 5' -61.5 NC_005832.1 + 34133 0.68 0.442669
Target:  5'- aACUUUACagacagaaGGUUCUGGUGGUggGUGAGGUa -3'
miRNA:   3'- -UGGAGUG--------CCGGGACCGCCA--CACUCCG- -5'
27101 5' -61.5 NC_005832.1 + 10860 0.69 0.374457
Target:  5'- gACCcgCGuCGGgCCUGGCGGccuUGAGGUa -3'
miRNA:   3'- -UGGa-GU-GCCgGGACCGCCac-ACUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.