Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27122 | 5' | -55.8 | NC_005832.1 | + | 44259 | 0.66 | 0.833207 |
Target: 5'- aAGCAGUCUGAAGagGGCUaCCUGgacAGGg -3' miRNA: 3'- cUCGUCGGAUUUUggCCGA-GGGC---UCC- -5' |
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27122 | 5' | -55.8 | NC_005832.1 | + | 1649 | 0.66 | 0.841646 |
Target: 5'- cGGCAGU--GAGGCuggCGGCUCCCGAc- -3' miRNA: 3'- cUCGUCGgaUUUUG---GCCGAGGGCUcc -5' |
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27122 | 5' | -55.8 | NC_005832.1 | + | 10869 | 0.66 | 0.857916 |
Target: 5'- --uCGGCCUGGGACCaGgaCgCCGGGGa -3' miRNA: 3'- cucGUCGGAUUUUGGcCgaG-GGCUCC- -5' |
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27122 | 5' | -55.8 | NC_005832.1 | + | 76056 | 0.66 | 0.849885 |
Target: 5'- gGGGCGGCCUAcguccacaGGACCagggugGGUUCCCaccAGGc -3' miRNA: 3'- -CUCGUCGGAU--------UUUGG------CCGAGGGc--UCC- -5' |
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27122 | 5' | -55.8 | NC_005832.1 | + | 91335 | 0.66 | 0.833207 |
Target: 5'- cGAGUAGUCUGcGAGCCuGGUgacccugCCCGGGu -3' miRNA: 3'- -CUCGUCGGAU-UUUGG-CCGa------GGGCUCc -5' |
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27122 | 5' | -55.8 | NC_005832.1 | + | 60255 | 0.66 | 0.8237 |
Target: 5'- gGAGCGGUUUAcucuugcGGAUCGGCg-CUGAGGg -3' miRNA: 3'- -CUCGUCGGAU-------UUUGGCCGagGGCUCC- -5' |
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27122 | 5' | -55.8 | NC_005832.1 | + | 19918 | 0.67 | 0.806763 |
Target: 5'- uGGCGGCCUcguccACgGGCg-CCGGGGg -3' miRNA: 3'- cUCGUCGGAuuu--UGgCCGagGGCUCC- -5' |
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27122 | 5' | -55.8 | NC_005832.1 | + | 91112 | 0.67 | 0.788284 |
Target: 5'- cGGgAGCCUAccuAAACUGGCUCC--AGGu -3' miRNA: 3'- cUCgUCGGAU---UUUGGCCGAGGgcUCC- -5' |
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27122 | 5' | -55.8 | NC_005832.1 | + | 42400 | 0.67 | 0.815756 |
Target: 5'- gGAGCAGCacgcguCC-GCcCCCGAGGa -3' miRNA: 3'- -CUCGUCGgauuuuGGcCGaGGGCUCC- -5' |
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27122 | 5' | -55.8 | NC_005832.1 | + | 67252 | 0.67 | 0.806763 |
Target: 5'- gGGGCuGCCUcucuacccgguGAGGCUguGGCUgUCGAGGg -3' miRNA: 3'- -CUCGuCGGA-----------UUUUGG--CCGAgGGCUCC- -5' |
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27122 | 5' | -55.8 | NC_005832.1 | + | 32488 | 0.67 | 0.797603 |
Target: 5'- uGGCGGCCUGccguACacauggaGGUUgCCCGGGGu -3' miRNA: 3'- cUCGUCGGAUuu--UGg------CCGA-GGGCUCC- -5' |
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27122 | 5' | -55.8 | NC_005832.1 | + | 64091 | 0.67 | 0.769213 |
Target: 5'- aGGuCGGCCUugacAGAGCCGGUcgggCCGAGGc -3' miRNA: 3'- cUC-GUCGGA----UUUUGGCCGag--GGCUCC- -5' |
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27122 | 5' | -55.8 | NC_005832.1 | + | 77189 | 0.68 | 0.739664 |
Target: 5'- cGAGguGCCcuucuuuaaUAAGGCUaucggggaGGCgCCCGAGGa -3' miRNA: 3'- -CUCguCGG---------AUUUUGG--------CCGaGGGCUCC- -5' |
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27122 | 5' | -55.8 | NC_005832.1 | + | 16797 | 0.68 | 0.739664 |
Target: 5'- gGGGCGGCCUGc-ACCuGCUCCaCGAc- -3' miRNA: 3'- -CUCGUCGGAUuuUGGcCGAGG-GCUcc -5' |
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27122 | 5' | -55.8 | NC_005832.1 | + | 99603 | 0.68 | 0.739664 |
Target: 5'- gGAGCuGCCcGAAGCgggagaGGCUCCCGucacguacggcGGGa -3' miRNA: 3'- -CUCGuCGGaUUUUGg-----CCGAGGGC-----------UCC- -5' |
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27122 | 5' | -55.8 | NC_005832.1 | + | 9866 | 0.68 | 0.719453 |
Target: 5'- aGGCAGgCUGGAGCUGucuGCUCCCuacgguucuucgGAGGa -3' miRNA: 3'- cUCGUCgGAUUUUGGC---CGAGGG------------CUCC- -5' |
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27122 | 5' | -55.8 | NC_005832.1 | + | 47711 | 0.68 | 0.719453 |
Target: 5'- uGGCGGCCgcGAGGCCGGC-CaaggaGAGGa -3' miRNA: 3'- cUCGUCGGa-UUUUGGCCGaGgg---CUCC- -5' |
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27122 | 5' | -55.8 | NC_005832.1 | + | 78808 | 0.69 | 0.65724 |
Target: 5'- uGAGCGGUCUGc-GCCGGCcacUCUGGGGc -3' miRNA: 3'- -CUCGUCGGAUuuUGGCCGa--GGGCUCC- -5' |
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27122 | 5' | -55.8 | NC_005832.1 | + | 90967 | 0.69 | 0.678163 |
Target: 5'- gGAGUGGacuuuaCCUGGAGCCaguuuagguaGGCUCCCGGGu -3' miRNA: 3'- -CUCGUC------GGAUUUUGG----------CCGAGGGCUCc -5' |
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27122 | 5' | -55.8 | NC_005832.1 | + | 20830 | 0.69 | 0.65724 |
Target: 5'- aGGGCGGCCUcguACuCuGCUCCCGAuccGGa -3' miRNA: 3'- -CUCGUCGGAuuuUG-GcCGAGGGCU---CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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