Results 1 - 20 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27122 | 5' | -55.8 | NC_005832.1 | + | 97272 | 0.73 | 0.463175 |
Target: 5'- -cGcCAGCCUG--GCCGGC-CUCGAGGc -3' miRNA: 3'- cuC-GUCGGAUuuUGGCCGaGGGCUCC- -5' |
|||||||
27122 | 5' | -55.8 | NC_005832.1 | + | 76056 | 0.66 | 0.849885 |
Target: 5'- gGGGCGGCCUAcguccacaGGACCagggugGGUUCCCaccAGGc -3' miRNA: 3'- -CUCGUCGGAU--------UUUGG------CCGAGGGc--UCC- -5' |
|||||||
27122 | 5' | -55.8 | NC_005832.1 | + | 91335 | 0.66 | 0.833207 |
Target: 5'- cGAGUAGUCUGcGAGCCuGGUgacccugCCCGGGu -3' miRNA: 3'- -CUCGUCGGAU-UUUGG-CCGa------GGGCUCc -5' |
|||||||
27122 | 5' | -55.8 | NC_005832.1 | + | 44259 | 0.66 | 0.833207 |
Target: 5'- aAGCAGUCUGAAGagGGCUaCCUGgacAGGg -3' miRNA: 3'- cUCGUCGGAUUUUggCCGA-GGGC---UCC- -5' |
|||||||
27122 | 5' | -55.8 | NC_005832.1 | + | 60255 | 0.66 | 0.8237 |
Target: 5'- gGAGCGGUUUAcucuugcGGAUCGGCg-CUGAGGg -3' miRNA: 3'- -CUCGUCGGAU-------UUUGGCCGagGGCUCC- -5' |
|||||||
27122 | 5' | -55.8 | NC_005832.1 | + | 42400 | 0.67 | 0.815756 |
Target: 5'- gGAGCAGCacgcguCC-GCcCCCGAGGa -3' miRNA: 3'- -CUCGUCGgauuuuGGcCGaGGGCUCC- -5' |
|||||||
27122 | 5' | -55.8 | NC_005832.1 | + | 67252 | 0.67 | 0.806763 |
Target: 5'- gGGGCuGCCUcucuacccgguGAGGCUguGGCUgUCGAGGg -3' miRNA: 3'- -CUCGuCGGA-----------UUUUGG--CCGAgGGCUCC- -5' |
|||||||
27122 | 5' | -55.8 | NC_005832.1 | + | 64091 | 0.67 | 0.769213 |
Target: 5'- aGGuCGGCCUugacAGAGCCGGUcgggCCGAGGc -3' miRNA: 3'- cUC-GUCGGA----UUUUGGCCGag--GGCUCC- -5' |
|||||||
27122 | 5' | -55.8 | NC_005832.1 | + | 77189 | 0.68 | 0.739664 |
Target: 5'- cGAGguGCCcuucuuuaaUAAGGCUaucggggaGGCgCCCGAGGa -3' miRNA: 3'- -CUCguCGG---------AUUUUGG--------CCGaGGGCUCC- -5' |
|||||||
27122 | 5' | -55.8 | NC_005832.1 | + | 16797 | 0.68 | 0.739664 |
Target: 5'- gGGGCGGCCUGc-ACCuGCUCCaCGAc- -3' miRNA: 3'- -CUCGUCGGAUuuUGGcCGAGG-GCUcc -5' |
|||||||
27122 | 5' | -55.8 | NC_005832.1 | + | 90967 | 0.69 | 0.678163 |
Target: 5'- gGAGUGGacuuuaCCUGGAGCCaguuuagguaGGCUCCCGGGu -3' miRNA: 3'- -CUCGUC------GGAUUUUGG----------CCGAGGGCUCc -5' |
|||||||
27122 | 5' | -55.8 | NC_005832.1 | + | 1116 | 0.7 | 0.625718 |
Target: 5'- uGGUGGCCc--AGCCGGCgUCCCgcGAGGa -3' miRNA: 3'- cUCGUCGGauuUUGGCCG-AGGG--CUCC- -5' |
|||||||
27122 | 5' | -55.8 | NC_005832.1 | + | 96675 | 0.7 | 0.604715 |
Target: 5'- aGGGCuuGGCCgagGAGGCCGGCaagcugUCCGAGa -3' miRNA: 3'- -CUCG--UCGGa--UUUUGGCCGa-----GGGCUCc -5' |
|||||||
27122 | 5' | -55.8 | NC_005832.1 | + | 95940 | 0.75 | 0.356911 |
Target: 5'- gGAGCGGCCgc-GGCCagGGCagcaagCCCGAGGg -3' miRNA: 3'- -CUCGUCGGauuUUGG--CCGa-----GGGCUCC- -5' |
|||||||
27122 | 5' | -55.8 | NC_005832.1 | + | 12484 | 0.75 | 0.348862 |
Target: 5'- uGGCAGCUgagggacgcuaUGAAGaggaUGGCUCCCGAGGc -3' miRNA: 3'- cUCGUCGG-----------AUUUUg---GCCGAGGGCUCC- -5' |
|||||||
27122 | 5' | -55.8 | NC_005832.1 | + | 90554 | 0.76 | 0.310579 |
Target: 5'- aGGGguGCCUGAggGACgGGaggCCCGAGGa -3' miRNA: 3'- -CUCguCGGAUU--UUGgCCga-GGGCUCC- -5' |
|||||||
27122 | 5' | -55.8 | NC_005832.1 | + | 14294 | 0.78 | 0.226239 |
Target: 5'- uGGCAGCCgucAAACCGGCcaagaCCGAGGa -3' miRNA: 3'- cUCGUCGGau-UUUGGCCGag---GGCUCC- -5' |
|||||||
27122 | 5' | -55.8 | NC_005832.1 | + | 53057 | 0.8 | 0.170363 |
Target: 5'- -uGCGGCCUAGAgauggucGCCGGCaggaUCCUGAGGg -3' miRNA: 3'- cuCGUCGGAUUU-------UGGCCG----AGGGCUCC- -5' |
|||||||
27122 | 5' | -55.8 | NC_005832.1 | + | 55954 | 0.81 | 0.162133 |
Target: 5'- cGGCGGCCcu-GACCGGCUCCgaGAGGu -3' miRNA: 3'- cUCGUCGGauuUUGGCCGAGGg-CUCC- -5' |
|||||||
27122 | 5' | -55.8 | NC_005832.1 | + | 10869 | 0.66 | 0.857916 |
Target: 5'- --uCGGCCUGGGACCaGgaCgCCGGGGa -3' miRNA: 3'- cucGUCGGAUUUUGGcCgaG-GGCUCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home