miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27122 5' -55.8 NC_005832.1 + 91951 1.1 0.001538
Target:  5'- gGAGCAGCCUAAAACCGGCUCCCGAGGa -3'
miRNA:   3'- -CUCGUCGGAUUUUGGCCGAGGGCUCC- -5'
27122 5' -55.8 NC_005832.1 + 55954 0.81 0.162133
Target:  5'- cGGCGGCCcu-GACCGGCUCCgaGAGGu -3'
miRNA:   3'- cUCGUCGGauuUUGGCCGAGGg-CUCC- -5'
27122 5' -55.8 NC_005832.1 + 53057 0.8 0.170363
Target:  5'- -uGCGGCCUAGAgauggucGCCGGCaggaUCCUGAGGg -3'
miRNA:   3'- cuCGUCGGAUUU-------UGGCCG----AGGGCUCC- -5'
27122 5' -55.8 NC_005832.1 + 14294 0.78 0.226239
Target:  5'- uGGCAGCCgucAAACCGGCcaagaCCGAGGa -3'
miRNA:   3'- cUCGUCGGau-UUUGGCCGag---GGCUCC- -5'
27122 5' -55.8 NC_005832.1 + 90554 0.76 0.310579
Target:  5'- aGGGguGCCUGAggGACgGGaggCCCGAGGa -3'
miRNA:   3'- -CUCguCGGAUU--UUGgCCga-GGGCUCC- -5'
27122 5' -55.8 NC_005832.1 + 12484 0.75 0.348862
Target:  5'- uGGCAGCUgagggacgcuaUGAAGaggaUGGCUCCCGAGGc -3'
miRNA:   3'- cUCGUCGG-----------AUUUUg---GCCGAGGGCUCC- -5'
27122 5' -55.8 NC_005832.1 + 95940 0.75 0.356911
Target:  5'- gGAGCGGCCgc-GGCCagGGCagcaagCCCGAGGg -3'
miRNA:   3'- -CUCGUCGGauuUUGG--CCGa-----GGGCUCC- -5'
27122 5' -55.8 NC_005832.1 + 97272 0.73 0.463175
Target:  5'- -cGcCAGCCUG--GCCGGC-CUCGAGGc -3'
miRNA:   3'- cuC-GUCGGAUuuUGGCCGaGGGCUCC- -5'
27122 5' -55.8 NC_005832.1 + 62440 0.72 0.532267
Target:  5'- aAGCAcucuGCCUcuuACgcaaGGCUCCCGAGGa -3'
miRNA:   3'- cUCGU----CGGAuuuUGg---CCGAGGGCUCC- -5'
27122 5' -55.8 NC_005832.1 + 3402 0.71 0.542459
Target:  5'- aGGCGGUgUGGAACgaGGUUCCgGAGGa -3'
miRNA:   3'- cUCGUCGgAUUUUGg-CCGAGGgCUCC- -5'
27122 5' -55.8 NC_005832.1 + 96675 0.7 0.604715
Target:  5'- aGGGCuuGGCCgagGAGGCCGGCaagcugUCCGAGa -3'
miRNA:   3'- -CUCG--UCGGa--UUUUGGCCGa-----GGGCUCc -5'
27122 5' -55.8 NC_005832.1 + 86388 0.7 0.624667
Target:  5'- aGAGCAGCCUAaggagcugagcagGAGCCugaagaGCagCCUGAGGa -3'
miRNA:   3'- -CUCGUCGGAU-------------UUUGGc-----CGa-GGGCUCC- -5'
27122 5' -55.8 NC_005832.1 + 1116 0.7 0.625718
Target:  5'- uGGUGGCCc--AGCCGGCgUCCCgcGAGGa -3'
miRNA:   3'- cUCGUCGGauuUUGGCCG-AGGG--CUCC- -5'
27122 5' -55.8 NC_005832.1 + 78808 0.69 0.65724
Target:  5'- uGAGCGGUCUGc-GCCGGCcacUCUGGGGc -3'
miRNA:   3'- -CUCGUCGGAUuuUGGCCGa--GGGCUCC- -5'
27122 5' -55.8 NC_005832.1 + 20830 0.69 0.65724
Target:  5'- aGGGCGGCCUcguACuCuGCUCCCGAuccGGa -3'
miRNA:   3'- -CUCGUCGGAuuuUG-GcCGAGGGCU---CC- -5'
27122 5' -55.8 NC_005832.1 + 90967 0.69 0.678163
Target:  5'- gGAGUGGacuuuaCCUGGAGCCaguuuagguaGGCUCCCGGGu -3'
miRNA:   3'- -CUCGUC------GGAUUUUGG----------CCGAGGGCUCc -5'
27122 5' -55.8 NC_005832.1 + 9866 0.68 0.719453
Target:  5'- aGGCAGgCUGGAGCUGucuGCUCCCuacgguucuucgGAGGa -3'
miRNA:   3'- cUCGUCgGAUUUUGGC---CGAGGG------------CUCC- -5'
27122 5' -55.8 NC_005832.1 + 47711 0.68 0.719453
Target:  5'- uGGCGGCCgcGAGGCCGGC-CaaggaGAGGa -3'
miRNA:   3'- cUCGUCGGa-UUUUGGCCGaGgg---CUCC- -5'
27122 5' -55.8 NC_005832.1 + 16797 0.68 0.739664
Target:  5'- gGGGCGGCCUGc-ACCuGCUCCaCGAc- -3'
miRNA:   3'- -CUCGUCGGAUuuUGGcCGAGG-GCUcc -5'
27122 5' -55.8 NC_005832.1 + 77189 0.68 0.739664
Target:  5'- cGAGguGCCcuucuuuaaUAAGGCUaucggggaGGCgCCCGAGGa -3'
miRNA:   3'- -CUCguCGG---------AUUUUGG--------CCGaGGGCUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.