miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27126 5' -48.5 NC_005832.1 + 13720 0.66 0.997436
Target:  5'- cCCAGACaCGGG-CAgggcGCUGGAGCUCGAc -3'
miRNA:   3'- -GGUUUG-GCCUaGU----UGGUUUUGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 93762 0.66 0.997436
Target:  5'- gCAAAcCCGGcUCAcacccuccacGCCGGAGCCCuGAg -3'
miRNA:   3'- gGUUU-GGCCuAGU----------UGGUUUUGGG-CUa -5'
27126 5' -48.5 NC_005832.1 + 76093 0.66 0.997436
Target:  5'- aCCAGGCCG--UCAACCccuaccucaaaaGGGACCUGGa -3'
miRNA:   3'- -GGUUUGGCcuAGUUGG------------UUUUGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 96570 0.66 0.997436
Target:  5'- gCAAGCa-GAUC-GCCAGAGCCCuGAg -3'
miRNA:   3'- gGUUUGgcCUAGuUGGUUUUGGG-CUa -5'
27126 5' -48.5 NC_005832.1 + 90058 0.66 0.996942
Target:  5'- cCCucuGCCGGuUCcGCCAAc-CCCGAg -3'
miRNA:   3'- -GGuu-UGGCCuAGuUGGUUuuGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 87561 0.66 0.996372
Target:  5'- gCC--GCCGGGUCcauGGCCAGcagauGCCUGAUc -3'
miRNA:   3'- -GGuuUGGCCUAG---UUGGUUu----UGGGCUA- -5'
27126 5' -48.5 NC_005832.1 + 98002 0.66 0.996372
Target:  5'- cCCGAGCCGGA-CggUCu-GACCCu-- -3'
miRNA:   3'- -GGUUUGGCCUaGuuGGuuUUGGGcua -5'
27126 5' -48.5 NC_005832.1 + 55486 0.66 0.996311
Target:  5'- gUggGCCGGAa-AACCGuccccaccgccggAGACCCGGUg -3'
miRNA:   3'- gGuuUGGCCUagUUGGU-------------UUUGGGCUA- -5'
27126 5' -48.5 NC_005832.1 + 89607 0.66 0.995991
Target:  5'- uCCGugucGGCCGGAaagacguacuuggagUCGGCCGGGGCCgUGGUg -3'
miRNA:   3'- -GGU----UUGGCCU---------------AGUUGGUUUUGG-GCUA- -5'
27126 5' -48.5 NC_005832.1 + 40500 0.67 0.994971
Target:  5'- uCCAAACuCGaGAcCcuCCAGAACCUGAUu -3'
miRNA:   3'- -GGUUUG-GC-CUaGuuGGUUUUGGGCUA- -5'
27126 5' -48.5 NC_005832.1 + 78637 0.67 0.994121
Target:  5'- -aGGACCGGGUCugagaAACCGuccacGGGCCUGAc -3'
miRNA:   3'- ggUUUGGCCUAG-----UUGGU-----UUUGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 1238 0.67 0.994121
Target:  5'- ---cGCCGGcUgGGCCAccAGGCCCGAc -3'
miRNA:   3'- gguuUGGCCuAgUUGGU--UUUGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 96489 0.67 0.99316
Target:  5'- gCCuguCCaGGUCAGCCAgGGACCUGGa -3'
miRNA:   3'- -GGuuuGGcCUAGUUGGU-UUUGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 78259 0.67 0.99316
Target:  5'- gCCuGACUGGGUUccaGGCCAGgAACCUGGg -3'
miRNA:   3'- -GGuUUGGCCUAG---UUGGUU-UUGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 95524 0.67 0.992848
Target:  5'- cCCAAAcagcuucgagguguCCGGAgCGGCCAGGGucCCCGGg -3'
miRNA:   3'- -GGUUU--------------GGCCUaGUUGGUUUU--GGGCUa -5'
27126 5' -48.5 NC_005832.1 + 75293 0.67 0.990861
Target:  5'- cCCcGACCGGAgacgUCAACagaaAGAAUCUGAa -3'
miRNA:   3'- -GGuUUGGCCU----AGUUGg---UUUUGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 10798 0.68 0.984473
Target:  5'- gCCGGACaggagguggGGAUCGGCUgcggaggccaGGAACCCGAg -3'
miRNA:   3'- -GGUUUGg--------CCUAGUUGG----------UUUUGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 66827 0.69 0.98022
Target:  5'- cCCAAACaCGGuccCGGCCGcgGCCUGGg -3'
miRNA:   3'- -GGUUUG-GCCua-GUUGGUuuUGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 91430 0.69 0.977793
Target:  5'- gCCAAGCUGGAcgUGGCCAggcagaggAAGCCCGc- -3'
miRNA:   3'- -GGUUUGGCCUa-GUUGGU--------UUUGGGCua -5'
27126 5' -48.5 NC_005832.1 + 67817 0.69 0.977793
Target:  5'- cCCAGGCCgaguGGAUCGccACCGgguccGAACCCGc- -3'
miRNA:   3'- -GGUUUGG----CCUAGU--UGGU-----UUUGGGCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.