Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27130 | 5' | -57.7 | NC_005832.1 | + | 20098 | 0.66 | 0.770462 |
Target: 5'- cCGCCugCAUGacguccGGGCUGGaGAuGCCc -3' miRNA: 3'- -GCGGugGUGCau----CCUGACC-CUuCGGu -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 28185 | 0.66 | 0.770462 |
Target: 5'- -cCCACCACccuGGACaGGGccuGAGCCAc -3' miRNA: 3'- gcGGUGGUGcauCCUGaCCC---UUCGGU- -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 79952 | 0.66 | 0.760867 |
Target: 5'- aGCC-CgACGU-GGACUGGGAcaGGUgGa -3' miRNA: 3'- gCGGuGgUGCAuCCUGACCCU--UCGgU- -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 52179 | 0.66 | 0.760867 |
Target: 5'- gGCC-CUcuugACGUAGGGuCUGGGGA-CCAg -3' miRNA: 3'- gCGGuGG----UGCAUCCU-GACCCUUcGGU- -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 69139 | 0.66 | 0.750179 |
Target: 5'- -aCCACUACG-GGGACcGGGAugcauuuguagguGGCCGa -3' miRNA: 3'- gcGGUGGUGCaUCCUGaCCCU-------------UCGGU- -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 31524 | 0.66 | 0.741337 |
Target: 5'- gCGCCACCGCucaguGUAGagaGGCggugGGGAGGaCCu -3' miRNA: 3'- -GCGGUGGUG-----CAUC---CUGa---CCCUUC-GGu -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 54338 | 0.67 | 0.721413 |
Target: 5'- aCGaCUACCACGcGGcGCUGGG-GGCCu -3' miRNA: 3'- -GC-GGUGGUGCaUCcUGACCCuUCGGu -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 94171 | 0.67 | 0.720408 |
Target: 5'- cCGUCuucuuguagaacaGCC-CGUGaaagccGGGCUGGGAGGCCc -3' miRNA: 3'- -GCGG-------------UGGuGCAU------CCUGACCCUUCGGu -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 40840 | 0.67 | 0.711328 |
Target: 5'- aGCCACCcugcCGUAGaGGCccgGGGGcaucuuuacGGCCAg -3' miRNA: 3'- gCGGUGGu---GCAUC-CUGa--CCCU---------UCGGU- -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 10759 | 0.67 | 0.701174 |
Target: 5'- gGCCGagGCGUAggcgucGGACUGGaAGGCCGa -3' miRNA: 3'- gCGGUggUGCAU------CCUGACCcUUCGGU- -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 43155 | 0.67 | 0.701174 |
Target: 5'- gGCCACCGuc-AGG-CUGGGAaagGGCCu -3' miRNA: 3'- gCGGUGGUgcaUCCuGACCCU---UCGGu -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 54527 | 0.67 | 0.680696 |
Target: 5'- -uCCACCuCGUGGGGcCUGGG--GCCGa -3' miRNA: 3'- gcGGUGGuGCAUCCU-GACCCuuCGGU- -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 43279 | 0.67 | 0.680696 |
Target: 5'- gGUgACCcCGUGGGGuuCgugcGGGAGGCCAg -3' miRNA: 3'- gCGgUGGuGCAUCCU--Ga---CCCUUCGGU- -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 42312 | 0.68 | 0.649693 |
Target: 5'- cCGUgGCCAUGUGuGGGCUGGGGu-CCu -3' miRNA: 3'- -GCGgUGGUGCAU-CCUGACCCUucGGu -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 56544 | 0.68 | 0.628938 |
Target: 5'- gCGCU-CC-CGUGGGAgUGGGGuuccuGGCCGg -3' miRNA: 3'- -GCGGuGGuGCAUCCUgACCCU-----UCGGU- -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 16488 | 0.68 | 0.608192 |
Target: 5'- gGCCACCGCGgcGGcCgcaGGAGGCgGa -3' miRNA: 3'- gCGGUGGUGCauCCuGac-CCUUCGgU- -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 52728 | 0.69 | 0.58752 |
Target: 5'- gGCCGCCGCaaAGGuCUGauaGAGGCCAg -3' miRNA: 3'- gCGGUGGUGcaUCCuGACc--CUUCGGU- -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 845 | 0.69 | 0.566981 |
Target: 5'- gCGCCGa---GUGGGACUcgaGGGggGCCc -3' miRNA: 3'- -GCGGUggugCAUCCUGA---CCCuuCGGu -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 97184 | 0.69 | 0.566981 |
Target: 5'- uGCCuccgAgCACGUcGuACUGGGAGGCCAg -3' miRNA: 3'- gCGG----UgGUGCAuCcUGACCCUUCGGU- -5' |
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27130 | 5' | -57.7 | NC_005832.1 | + | 67553 | 0.7 | 0.546629 |
Target: 5'- cCGCCGCCGCGgcccacuCUGGGAaagAGUCAa -3' miRNA: 3'- -GCGGUGGUGCauccu--GACCCU---UCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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