miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27139 3' -52.6 NC_005832.1 + 2011 1.13 0.003052
Target:  5'- cCCUGUCCCCCUCGGACUUUAAGACGGu -3'
miRNA:   3'- -GGACAGGGGGAGCCUGAAAUUCUGCC- -5'
27139 3' -52.6 NC_005832.1 + 6731 0.79 0.379287
Target:  5'- -aUGUCCCCCUUGGACUgggcccuggacauGACGGc -3'
miRNA:   3'- ggACAGGGGGAGCCUGAaauu---------CUGCC- -5'
27139 3' -52.6 NC_005832.1 + 55822 0.73 0.678163
Target:  5'- cCCUGacaaacaCCCCgUCGGACUUUAAcguGugGGc -3'
miRNA:   3'- -GGACa------GGGGgAGCCUGAAAUU---CugCC- -5'
27139 3' -52.6 NC_005832.1 + 80844 0.73 0.698927
Target:  5'- -gUGUCCCCCg-GGGCccu-GGACGGg -3'
miRNA:   3'- ggACAGGGGGagCCUGaaauUCUGCC- -5'
27139 3' -52.6 NC_005832.1 + 67629 0.71 0.797603
Target:  5'- cCCUGggucagggagCUCCCUUGGACcUUGAGaAUGGa -3'
miRNA:   3'- -GGACa---------GGGGGAGCCUGaAAUUC-UGCC- -5'
27139 3' -52.6 NC_005832.1 + 71315 0.7 0.857916
Target:  5'- cCUUGUCCCauuggacgggCUCGGACggccuGACGGc -3'
miRNA:   3'- -GGACAGGGg---------GAGCCUGaaauuCUGCC- -5'
27139 3' -52.6 NC_005832.1 + 47675 0.69 0.865731
Target:  5'- gCUgGUCCUCUUCGGcCUUUGGGGCc- -3'
miRNA:   3'- gGA-CAGGGGGAGCCuGAAAUUCUGcc -5'
27139 3' -52.6 NC_005832.1 + 43486 0.69 0.87107
Target:  5'- uCCUcGUCCCCgUCGGACUUUcucccucgcccuccAGGAg-- -3'
miRNA:   3'- -GGA-CAGGGGgAGCCUGAAA--------------UUCUgcc -5'
27139 3' -52.6 NC_005832.1 + 103462 0.69 0.887821
Target:  5'- cCCUGUCCCCa-CGGuCUguuGGAUGa -3'
miRNA:   3'- -GGACAGGGGgaGCCuGAaauUCUGCc -5'
27139 3' -52.6 NC_005832.1 + 49390 0.69 0.901367
Target:  5'- gCCUGaCCUCCUCGGACccuuccuuGGugGu -3'
miRNA:   3'- -GGACaGGGGGAGCCUGaaau----UCugCc -5'
27139 3' -52.6 NC_005832.1 + 19039 0.68 0.907773
Target:  5'- -gUGUCuUCCCUCGGAucCUUUgGAGGCGa -3'
miRNA:   3'- ggACAG-GGGGAGCCU--GAAA-UUCUGCc -5'
27139 3' -52.6 NC_005832.1 + 51013 0.68 0.913931
Target:  5'- cCCUGaggCCCCCUUGG-UUcUAGGACa- -3'
miRNA:   3'- -GGACa--GGGGGAGCCuGAaAUUCUGcc -5'
27139 3' -52.6 NC_005832.1 + 43796 0.68 0.913931
Target:  5'- gCCUGcUUCCCCaugUUGGACUgguAGGCGu -3'
miRNA:   3'- -GGAC-AGGGGG---AGCCUGAaauUCUGCc -5'
27139 3' -52.6 NC_005832.1 + 11900 0.68 0.925495
Target:  5'- uCC-GUCUCCCauagCGGGCcgcAAGACGGc -3'
miRNA:   3'- -GGaCAGGGGGa---GCCUGaaaUUCUGCC- -5'
27139 3' -52.6 NC_005832.1 + 72413 0.68 0.925495
Target:  5'- cCCggGUCCaCCCggGGACUcUUGAGACu- -3'
miRNA:   3'- -GGa-CAGG-GGGagCCUGA-AAUUCUGcc -5'
27139 3' -52.6 NC_005832.1 + 88271 0.68 0.930898
Target:  5'- gCCUGgccagggUCCUCUCGGAgaUUAcgcucaGGGCGGu -3'
miRNA:   3'- -GGACa------GGGGGAGCCUgaAAU------UCUGCC- -5'
27139 3' -52.6 NC_005832.1 + 35138 0.68 0.930898
Target:  5'- gCCUGUCCcugCCUUCGGACa--GGGGCc- -3'
miRNA:   3'- -GGACAGG---GGGAGCCUGaaaUUCUGcc -5'
27139 3' -52.6 NC_005832.1 + 87124 0.67 0.936049
Target:  5'- aCUGUCCCCUgaggggaUGGugUUUucggAAGACGc -3'
miRNA:   3'- gGACAGGGGGa------GCCugAAA----UUCUGCc -5'
27139 3' -52.6 NC_005832.1 + 38870 0.67 0.940471
Target:  5'- gCCUGUCCcauaCCCUgGGuaaagugGCUUauAGAUGGa -3'
miRNA:   3'- -GGACAGG----GGGAgCC-------UGAAauUCUGCC- -5'
27139 3' -52.6 NC_005832.1 + 20523 0.67 0.9456
Target:  5'- cUCUGagggCCCCCgUGGACccucugggAGGACGGu -3'
miRNA:   3'- -GGACa---GGGGGaGCCUGaaa-----UUCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.