miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27139 3' -52.6 NC_005832.1 + 2011 1.13 0.003052
Target:  5'- cCCUGUCCCCCUCGGACUUUAAGACGGu -3'
miRNA:   3'- -GGACAGGGGGAGCCUGAAAUUCUGCC- -5'
27139 3' -52.6 NC_005832.1 + 62090 0.66 0.971453
Target:  5'- cUCUGUCCCga--GGACg--GGGAUGGa -3'
miRNA:   3'- -GGACAGGGggagCCUGaaaUUCUGCC- -5'
27139 3' -52.6 NC_005832.1 + 7888 0.66 0.971453
Target:  5'- uCCUGUgccaUCCCCUgGcaGACUggGAGAgGGu -3'
miRNA:   3'- -GGACA----GGGGGAgC--CUGAaaUUCUgCC- -5'
27139 3' -52.6 NC_005832.1 + 6195 0.66 0.966534
Target:  5'- cUCUGUCCuCCCguccacccugacugUGGACUguggAGGAgGGu -3'
miRNA:   3'- -GGACAGG-GGGa-------------GCCUGAaa--UUCUgCC- -5'
27139 3' -52.6 NC_005832.1 + 12688 0.66 0.965217
Target:  5'- gCCgagGgCCUCCUUGGACUUUAAuguuGACa- -3'
miRNA:   3'- -GGa--CaGGGGGAGCCUGAAAUU----CUGcc -5'
27139 3' -52.6 NC_005832.1 + 75821 0.66 0.961407
Target:  5'- aCCUGcaaaagcacaggaUCCCCUUCGauCUgagGAGGCGGu -3'
miRNA:   3'- -GGAC-------------AGGGGGAGCcuGAaa-UUCUGCC- -5'
27139 3' -52.6 NC_005832.1 + 44645 0.66 0.958082
Target:  5'- --cGUCCUCuaCUCGGGCUc---GACGGg -3'
miRNA:   3'- ggaCAGGGG--GAGCCUGAaauuCUGCC- -5'
27139 3' -52.6 NC_005832.1 + 80522 0.66 0.956931
Target:  5'- uCCUGggcuccagguucgUCCCgUCGGGCUacaggaggucggugGAGACGGg -3'
miRNA:   3'- -GGACa------------GGGGgAGCCUGAaa------------UUCUGCC- -5'
27139 3' -52.6 NC_005832.1 + 38870 0.67 0.940471
Target:  5'- gCCUGUCCcauaCCCUgGGuaaagugGCUUauAGAUGGa -3'
miRNA:   3'- -GGACAGG----GGGAgCC-------UGAAauUCUGCC- -5'
27139 3' -52.6 NC_005832.1 + 87124 0.67 0.936049
Target:  5'- aCUGUCCCCUgaggggaUGGugUUUucggAAGACGc -3'
miRNA:   3'- gGACAGGGGGa------GCCugAAA----UUCUGCc -5'
27139 3' -52.6 NC_005832.1 + 35138 0.68 0.930898
Target:  5'- gCCUGUCCcugCCUUCGGACa--GGGGCc- -3'
miRNA:   3'- -GGACAGG---GGGAGCCUGaaaUUCUGcc -5'
27139 3' -52.6 NC_005832.1 + 80844 0.73 0.698927
Target:  5'- -gUGUCCCCCg-GGGCccu-GGACGGg -3'
miRNA:   3'- ggACAGGGGGagCCUGaaauUCUGCC- -5'
27139 3' -52.6 NC_005832.1 + 67629 0.71 0.797603
Target:  5'- cCCUGggucagggagCUCCCUUGGACcUUGAGaAUGGa -3'
miRNA:   3'- -GGACa---------GGGGGAGCCUGaAAUUC-UGCC- -5'
27139 3' -52.6 NC_005832.1 + 43486 0.69 0.87107
Target:  5'- uCCUcGUCCCCgUCGGACUUUcucccucgcccuccAGGAg-- -3'
miRNA:   3'- -GGA-CAGGGGgAGCCUGAAA--------------UUCUgcc -5'
27139 3' -52.6 NC_005832.1 + 49390 0.69 0.901367
Target:  5'- gCCUGaCCUCCUCGGACccuuccuuGGugGu -3'
miRNA:   3'- -GGACaGGGGGAGCCUGaaau----UCugCc -5'
27139 3' -52.6 NC_005832.1 + 51013 0.68 0.913931
Target:  5'- cCCUGaggCCCCCUUGG-UUcUAGGACa- -3'
miRNA:   3'- -GGACa--GGGGGAGCCuGAaAUUCUGcc -5'
27139 3' -52.6 NC_005832.1 + 11900 0.68 0.925495
Target:  5'- uCC-GUCUCCCauagCGGGCcgcAAGACGGc -3'
miRNA:   3'- -GGaCAGGGGGa---GCCUGaaaUUCUGCC- -5'
27139 3' -52.6 NC_005832.1 + 72413 0.68 0.925495
Target:  5'- cCCggGUCCaCCCggGGACUcUUGAGACu- -3'
miRNA:   3'- -GGa-CAGG-GGGagCCUGA-AAUUCUGcc -5'
27139 3' -52.6 NC_005832.1 + 13124 0.66 0.971453
Target:  5'- gCCUGgacCCCagCCUgaCGGACcccGAGACGGu -3'
miRNA:   3'- -GGACa--GGG--GGA--GCCUGaaaUUCUGCC- -5'
27139 3' -52.6 NC_005832.1 + 55822 0.73 0.678163
Target:  5'- cCCUGacaaacaCCCCgUCGGACUUUAAcguGugGGc -3'
miRNA:   3'- -GGACa------GGGGgAGCCUGAAAUU---CugCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.