miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27139 3' -52.6 NC_005832.1 + 2011 1.13 0.003052
Target:  5'- cCCUGUCCCCCUCGGACUUUAAGACGGu -3'
miRNA:   3'- -GGACAGGGGGAGCCUGAAAUUCUGCC- -5'
27139 3' -52.6 NC_005832.1 + 6195 0.66 0.966534
Target:  5'- cUCUGUCCuCCCguccacccugacugUGGACUguggAGGAgGGu -3'
miRNA:   3'- -GGACAGG-GGGa-------------GCCUGAaa--UUCUgCC- -5'
27139 3' -52.6 NC_005832.1 + 6731 0.79 0.379287
Target:  5'- -aUGUCCCCCUUGGACUgggcccuggacauGACGGc -3'
miRNA:   3'- ggACAGGGGGAGCCUGAaauu---------CUGCC- -5'
27139 3' -52.6 NC_005832.1 + 7888 0.66 0.971453
Target:  5'- uCCUGUgccaUCCCCUgGcaGACUggGAGAgGGu -3'
miRNA:   3'- -GGACA----GGGGGAgC--CUGAaaUUCUgCC- -5'
27139 3' -52.6 NC_005832.1 + 11900 0.68 0.925495
Target:  5'- uCC-GUCUCCCauagCGGGCcgcAAGACGGc -3'
miRNA:   3'- -GGaCAGGGGGa---GCCUGaaaUUCUGCC- -5'
27139 3' -52.6 NC_005832.1 + 12688 0.66 0.965217
Target:  5'- gCCgagGgCCUCCUUGGACUUUAAuguuGACa- -3'
miRNA:   3'- -GGa--CaGGGGGAGCCUGAAAUU----CUGcc -5'
27139 3' -52.6 NC_005832.1 + 13124 0.66 0.971453
Target:  5'- gCCUGgacCCCagCCUgaCGGACcccGAGACGGu -3'
miRNA:   3'- -GGACa--GGG--GGA--GCCUGaaaUUCUGCC- -5'
27139 3' -52.6 NC_005832.1 + 19039 0.68 0.907773
Target:  5'- -gUGUCuUCCCUCGGAucCUUUgGAGGCGa -3'
miRNA:   3'- ggACAG-GGGGAGCCU--GAAA-UUCUGCc -5'
27139 3' -52.6 NC_005832.1 + 20523 0.67 0.9456
Target:  5'- cUCUGagggCCCCCgUGGACccucugggAGGACGGu -3'
miRNA:   3'- -GGACa---GGGGGaGCCUGaaa-----UUCUGCC- -5'
27139 3' -52.6 NC_005832.1 + 35138 0.68 0.930898
Target:  5'- gCCUGUCCcugCCUUCGGACa--GGGGCc- -3'
miRNA:   3'- -GGACAGG---GGGAGCCUGaaaUUCUGcc -5'
27139 3' -52.6 NC_005832.1 + 38870 0.67 0.940471
Target:  5'- gCCUGUCCcauaCCCUgGGuaaagugGCUUauAGAUGGa -3'
miRNA:   3'- -GGACAGG----GGGAgCC-------UGAAauUCUGCC- -5'
27139 3' -52.6 NC_005832.1 + 41425 0.67 0.950003
Target:  5'- ---cUCUCCUgUCGGACUUUAGGuccACGGg -3'
miRNA:   3'- ggacAGGGGG-AGCCUGAAAUUC---UGCC- -5'
27139 3' -52.6 NC_005832.1 + 43194 0.66 0.958082
Target:  5'- aCCUuuUCUCCCUCGGGCgucucgUAGGGacacaGGa -3'
miRNA:   3'- -GGAc-AGGGGGAGCCUGaa----AUUCUg----CC- -5'
27139 3' -52.6 NC_005832.1 + 43486 0.69 0.87107
Target:  5'- uCCUcGUCCCCgUCGGACUUUcucccucgcccuccAGGAg-- -3'
miRNA:   3'- -GGA-CAGGGGgAGCCUGAAA--------------UUCUgcc -5'
27139 3' -52.6 NC_005832.1 + 43796 0.68 0.913931
Target:  5'- gCCUGcUUCCCCaugUUGGACUgguAGGCGu -3'
miRNA:   3'- -GGAC-AGGGGG---AGCCUGAaauUCUGCc -5'
27139 3' -52.6 NC_005832.1 + 44536 0.66 0.968444
Target:  5'- -aUGUCCUCCUgGGuC---AGGACGGc -3'
miRNA:   3'- ggACAGGGGGAgCCuGaaaUUCUGCC- -5'
27139 3' -52.6 NC_005832.1 + 44645 0.66 0.958082
Target:  5'- --cGUCCUCuaCUCGGGCUc---GACGGg -3'
miRNA:   3'- ggaCAGGGG--GAGCCUGAaauuCUGCC- -5'
27139 3' -52.6 NC_005832.1 + 47675 0.69 0.865731
Target:  5'- gCUgGUCCUCUUCGGcCUUUGGGGCc- -3'
miRNA:   3'- gGA-CAGGGGGAGCCuGAAAUUCUGcc -5'
27139 3' -52.6 NC_005832.1 + 49390 0.69 0.901367
Target:  5'- gCCUGaCCUCCUCGGACccuuccuuGGugGu -3'
miRNA:   3'- -GGACaGGGGGAGCCUGaaau----UCugCc -5'
27139 3' -52.6 NC_005832.1 + 51013 0.68 0.913931
Target:  5'- cCCUGaggCCCCCUUGG-UUcUAGGACa- -3'
miRNA:   3'- -GGACa--GGGGGAGCCuGAaAUUCUGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.