miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27162 5' -51.7 NC_005832.1 + 26513 1.1 0.00368
Target:  5'- uUUGCGGCCCUCUUGAUGGAAAAGACCu -3'
miRNA:   3'- -AACGCCGGGAGAACUACCUUUUCUGG- -5'
27162 5' -51.7 NC_005832.1 + 26611 0.77 0.457782
Target:  5'- -cGCGGCCUUUaaGGUGGcGAGGGCCg -3'
miRNA:   3'- aaCGCCGGGAGaaCUACCuUUUCUGG- -5'
27162 5' -51.7 NC_005832.1 + 52178 0.75 0.572067
Target:  5'- ---aGGCCCUCUUGAcguagGGucuGGGGACCa -3'
miRNA:   3'- aacgCCGGGAGAACUa----CCu--UUUCUGG- -5'
27162 5' -51.7 NC_005832.1 + 16591 0.73 0.680998
Target:  5'- -gGCuGGCgCUCUUGAUGGGAuccaccgccAGGGCUg -3'
miRNA:   3'- aaCG-CCGgGAGAACUACCUU---------UUCUGG- -5'
27162 5' -51.7 NC_005832.1 + 72070 0.72 0.723846
Target:  5'- -gGCGGCCgUCgUGGUGGGaguGAGGAUg -3'
miRNA:   3'- aaCGCCGGgAGaACUACCU---UUUCUGg -5'
27162 5' -51.7 NC_005832.1 + 37247 0.71 0.765252
Target:  5'- cUGCGGCUCUCU---UGGcAAAGACg -3'
miRNA:   3'- aACGCCGGGAGAacuACCuUUUCUGg -5'
27162 5' -51.7 NC_005832.1 + 54639 0.7 0.804501
Target:  5'- -gGCGGCgucCCUCUUGGgguucucGGAcuGGGCCu -3'
miRNA:   3'- aaCGCCG---GGAGAACUa------CCUuuUCUGG- -5'
27162 5' -51.7 NC_005832.1 + 19579 0.7 0.813894
Target:  5'- gUGaGGUCCUCUgGAcUGGAAAacGGACCu -3'
miRNA:   3'- aACgCCGGGAGAaCU-ACCUUU--UCUGG- -5'
27162 5' -51.7 NC_005832.1 + 13244 0.7 0.823098
Target:  5'- -aGCaGGCCC---UGAUGGAAAAGGgCg -3'
miRNA:   3'- aaCG-CCGGGagaACUACCUUUUCUgG- -5'
27162 5' -51.7 NC_005832.1 + 26479 0.7 0.832994
Target:  5'- -gGCGGCCCUCgccaccuuAAAGGCCg -3'
miRNA:   3'- aaCGCCGGGAGaacuaccuUUUCUGG- -5'
27162 5' -51.7 NC_005832.1 + 53613 0.7 0.840904
Target:  5'- -gGCGaguauacuCCCgUCUUGGUGGAaGAAGGCCg -3'
miRNA:   3'- aaCGCc-------GGG-AGAACUACCU-UUUCUGG- -5'
27162 5' -51.7 NC_005832.1 + 90006 0.69 0.857844
Target:  5'- -gGUGGgCCg--UGAUGGAGGAGcCCa -3'
miRNA:   3'- aaCGCCgGGagaACUACCUUUUCuGG- -5'
27162 5' -51.7 NC_005832.1 + 46197 0.69 0.873854
Target:  5'- -gGCucaGGCCCUCcUGGaGGAcAGGGACCc -3'
miRNA:   3'- aaCG---CCGGGAGaACUaCCU-UUUCUGG- -5'
27162 5' -51.7 NC_005832.1 + 100753 0.69 0.881491
Target:  5'- uUUGCGGCU------AUGGGAGAGGCCg -3'
miRNA:   3'- -AACGCCGGgagaacUACCUUUUCUGG- -5'
27162 5' -51.7 NC_005832.1 + 7295 0.68 0.888876
Target:  5'- -gGCGGUCCUgUguccGGGAGAGGCUg -3'
miRNA:   3'- aaCGCCGGGAgAacuaCCUUUUCUGG- -5'
27162 5' -51.7 NC_005832.1 + 6518 0.68 0.896002
Target:  5'- cUGUGGCCCUg-UGcgGGGccAGGGACa -3'
miRNA:   3'- aACGCCGGGAgaACuaCCU--UUUCUGg -5'
27162 5' -51.7 NC_005832.1 + 28053 0.68 0.902867
Target:  5'- -gGCucaGGCCCUgUccagGGUGGugGGGACCa -3'
miRNA:   3'- aaCG---CCGGGAgAa---CUACCuuUUCUGG- -5'
27162 5' -51.7 NC_005832.1 + 5567 0.68 0.902867
Target:  5'- gUGCacaGGCCCUCcgaGUGGAGgcccucucacgGGGACCa -3'
miRNA:   3'- aACG---CCGGGAGaacUACCUU-----------UUCUGG- -5'
27162 5' -51.7 NC_005832.1 + 66401 0.68 0.902867
Target:  5'- -gGCGGCCUccCUggGAUGGGAcuuggGAGACg -3'
miRNA:   3'- aaCGCCGGGa-GAa-CUACCUU-----UUCUGg -5'
27162 5' -51.7 NC_005832.1 + 95823 0.68 0.915793
Target:  5'- -cGCGGCCgCUCccUUGAccgccgcagcGGGAAAGACUc -3'
miRNA:   3'- aaCGCCGG-GAG--AACUa---------CCUUUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.