Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 1179 | 0.67 | 0.927634 |
Target: 5'- cUGCGGUCUUUgacaGAgGcGAGAAGGCCa -3' miRNA: 3'- aACGCCGGGAGaa--CUaC-CUUUUCUGG- -5' |
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27162 | 5' | -51.7 | NC_005832.1 | + | 5567 | 0.68 | 0.902867 |
Target: 5'- gUGCacaGGCCCUCcgaGUGGAGgcccucucacgGGGACCa -3' miRNA: 3'- aACG---CCGGGAGaacUACCUU-----------UUCUGG- -5' |
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27162 | 5' | -51.7 | NC_005832.1 | + | 6518 | 0.68 | 0.896002 |
Target: 5'- cUGUGGCCCUg-UGcgGGGccAGGGACa -3' miRNA: 3'- aACGCCGGGAgaACuaCCU--UUUCUGg -5' |
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27162 | 5' | -51.7 | NC_005832.1 | + | 7295 | 0.68 | 0.888876 |
Target: 5'- -gGCGGUCCUgUguccGGGAGAGGCUg -3' miRNA: 3'- aaCGCCGGGAgAacuaCCUUUUCUGG- -5' |
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27162 | 5' | -51.7 | NC_005832.1 | + | 12029 | 0.68 | 0.915793 |
Target: 5'- cUUGCGGCCCgCU--AUGGGAGacGGAgCCc -3' miRNA: 3'- -AACGCCGGGaGAacUACCUUU--UCU-GG- -5' |
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27162 | 5' | -51.7 | NC_005832.1 | + | 13244 | 0.7 | 0.823098 |
Target: 5'- -aGCaGGCCC---UGAUGGAAAAGGgCg -3' miRNA: 3'- aaCG-CCGGGagaACUACCUUUUCUgG- -5' |
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27162 | 5' | -51.7 | NC_005832.1 | + | 15800 | 0.68 | 0.915793 |
Target: 5'- ---aGGCUCUCUUGAagcugccGGGAGAGGCg -3' miRNA: 3'- aacgCCGGGAGAACUa------CCUUUUCUGg -5' |
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27162 | 5' | -51.7 | NC_005832.1 | + | 16591 | 0.73 | 0.680998 |
Target: 5'- -gGCuGGCgCUCUUGAUGGGAuccaccgccAGGGCUg -3' miRNA: 3'- aaCG-CCGgGAGAACUACCUU---------UUCUGG- -5' |
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27162 | 5' | -51.7 | NC_005832.1 | + | 19579 | 0.7 | 0.813894 |
Target: 5'- gUGaGGUCCUCUgGAcUGGAAAacGGACCu -3' miRNA: 3'- aACgCCGGGAGAaCU-ACCUUU--UCUGG- -5' |
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27162 | 5' | -51.7 | NC_005832.1 | + | 20177 | 0.66 | 0.95666 |
Target: 5'- -gGCauGGCCCUCaUGAUGGu---GGCg -3' miRNA: 3'- aaCG--CCGGGAGaACUACCuuuuCUGg -5' |
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27162 | 5' | -51.7 | NC_005832.1 | + | 26479 | 0.7 | 0.832994 |
Target: 5'- -gGCGGCCCUCgccaccuuAAAGGCCg -3' miRNA: 3'- aaCGCCGGGAGaacuaccuUUUCUGG- -5' |
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27162 | 5' | -51.7 | NC_005832.1 | + | 26513 | 1.1 | 0.00368 |
Target: 5'- uUUGCGGCCCUCUUGAUGGAAAAGACCu -3' miRNA: 3'- -AACGCCGGGAGAACUACCUUUUCUGG- -5' |
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27162 | 5' | -51.7 | NC_005832.1 | + | 26611 | 0.77 | 0.457782 |
Target: 5'- -cGCGGCCUUUaaGGUGGcGAGGGCCg -3' miRNA: 3'- aaCGCCGGGAGaaCUACCuUUUCUGG- -5' |
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27162 | 5' | -51.7 | NC_005832.1 | + | 28053 | 0.68 | 0.902867 |
Target: 5'- -gGCucaGGCCCUgUccagGGUGGugGGGACCa -3' miRNA: 3'- aaCG---CCGGGAgAa---CUACCuuUUCUGG- -5' |
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27162 | 5' | -51.7 | NC_005832.1 | + | 31097 | 0.68 | 0.915793 |
Target: 5'- -cGCGGUCCUC---AUGGcgucuucuGGAGACCa -3' miRNA: 3'- aaCGCCGGGAGaacUACCu-------UUUCUGG- -5' |
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27162 | 5' | -51.7 | NC_005832.1 | + | 31536 | 0.67 | 0.923614 |
Target: 5'- aUGUGGCCCagugcgccaccgcUCaguguagagaggcGGUGGGGAGGACCu -3' miRNA: 3'- aACGCCGGG-------------AGaa-----------CUACCUUUUCUGG- -5' |
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27162 | 5' | -51.7 | NC_005832.1 | + | 35925 | 0.66 | 0.963166 |
Target: 5'- aUUGCGGUCCUCa-GcgGGAcAaucaugggcaggucGGACCa -3' miRNA: 3'- -AACGCCGGGAGaaCuaCCUuU--------------UCUGG- -5' |
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27162 | 5' | -51.7 | NC_005832.1 | + | 36242 | 0.67 | 0.937873 |
Target: 5'- -cGCGGaCCUUgaGGccguacuUGGAGAGGACCc -3' miRNA: 3'- aaCGCCgGGAGaaCU-------ACCUUUUCUGG- -5' |
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27162 | 5' | -51.7 | NC_005832.1 | + | 36600 | 0.67 | 0.938385 |
Target: 5'- -gGCgGGCCCccacggCUgcaGGUGcGGAAAGGCCa -3' miRNA: 3'- aaCG-CCGGGa-----GAa--CUAC-CUUUUCUGG- -5' |
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27162 | 5' | -51.7 | NC_005832.1 | + | 37247 | 0.71 | 0.765252 |
Target: 5'- cUGCGGCUCUCU---UGGcAAAGACg -3' miRNA: 3'- aACGCCGGGAGAacuACCuUUUCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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