Results 1 - 20 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 53773 | 0.66 | 0.959812 |
Target: 5'- -aGCGGaccuguuuaCCCUCgcgcccggGGGAAAGGCCu -3' miRNA: 3'- aaCGCC---------GGGAGaacua---CCUUUUCUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 31097 | 0.68 | 0.915793 |
Target: 5'- -cGCGGUCCUC---AUGGcgucuucuGGAGACCa -3' miRNA: 3'- aaCGCCGGGAGaacUACCu-------UUUCUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 95823 | 0.68 | 0.915793 |
Target: 5'- -cGCGGCCgCUCccUUGAccgccgcagcGGGAAAGACUc -3' miRNA: 3'- aaCGCCGG-GAG--AACUa---------CCUUUUCUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 1179 | 0.67 | 0.927634 |
Target: 5'- cUGCGGUCUUUgacaGAgGcGAGAAGGCCa -3' miRNA: 3'- aACGCCGGGAGaa--CUaC-CUUUUCUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 42385 | 0.67 | 0.927634 |
Target: 5'- -gGCGGCCCUCcucAUGGAGcAGcACg -3' miRNA: 3'- aaCGCCGGGAGaacUACCUUuUC-UGg -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 42517 | 0.67 | 0.933146 |
Target: 5'- --uCGGgCCUCU--GUGGAAGAGgACCg -3' miRNA: 3'- aacGCCgGGAGAacUACCUUUUC-UGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 36242 | 0.67 | 0.937873 |
Target: 5'- -cGCGGaCCUUgaGGccguacuUGGAGAGGACCc -3' miRNA: 3'- aaCGCCgGGAGaaCU-------ACCUUUUCUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 43550 | 0.67 | 0.943354 |
Target: 5'- cUGUGuGCUCUCUUGGggacGGAGAGuacgccGACCc -3' miRNA: 3'- aACGC-CGGGAGAACUa---CCUUUU------CUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 39676 | 0.66 | 0.955435 |
Target: 5'- cUGCGGCuccCCUCgacucguccaaGGUGGGuccugugGGAGACCa -3' miRNA: 3'- aACGCCG---GGAGaa---------CUACCU-------UUUCUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 15800 | 0.68 | 0.915793 |
Target: 5'- ---aGGCUCUCUUGAagcugccGGGAGAGGCg -3' miRNA: 3'- aacgCCGGGAGAACUa------CCUUUUCUGg -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 66401 | 0.68 | 0.902867 |
Target: 5'- -gGCGGCCUccCUggGAUGGGAcuuggGAGACg -3' miRNA: 3'- aaCGCCGGGa-GAa-CUACCUU-----UUCUGg -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 28053 | 0.68 | 0.902867 |
Target: 5'- -gGCucaGGCCCUgUccagGGUGGugGGGACCa -3' miRNA: 3'- aaCG---CCGGGAgAa---CUACCuuUUCUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 52178 | 0.75 | 0.572067 |
Target: 5'- ---aGGCCCUCUUGAcguagGGucuGGGGACCa -3' miRNA: 3'- aacgCCGGGAGAACUa----CCu--UUUCUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 16591 | 0.73 | 0.680998 |
Target: 5'- -gGCuGGCgCUCUUGAUGGGAuccaccgccAGGGCUg -3' miRNA: 3'- aaCG-CCGgGAGAACUACCUU---------UUCUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 72070 | 0.72 | 0.723846 |
Target: 5'- -gGCGGCCgUCgUGGUGGGaguGAGGAUg -3' miRNA: 3'- aaCGCCGGgAGaACUACCU---UUUCUGg -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 26479 | 0.7 | 0.832994 |
Target: 5'- -gGCGGCCCUCgccaccuuAAAGGCCg -3' miRNA: 3'- aaCGCCGGGAGaacuaccuUUUCUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 53613 | 0.7 | 0.840904 |
Target: 5'- -gGCGaguauacuCCCgUCUUGGUGGAaGAAGGCCg -3' miRNA: 3'- aaCGCc-------GGG-AGAACUACCU-UUUCUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 7295 | 0.68 | 0.888876 |
Target: 5'- -gGCGGUCCUgUguccGGGAGAGGCUg -3' miRNA: 3'- aaCGCCGGGAgAacuaCCUUUUCUGG- -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 6518 | 0.68 | 0.896002 |
Target: 5'- cUGUGGCCCUg-UGcgGGGccAGGGACa -3' miRNA: 3'- aACGCCGGGAgaACuaCCU--UUUCUGg -5' |
|||||||
27162 | 5' | -51.7 | NC_005832.1 | + | 5567 | 0.68 | 0.902867 |
Target: 5'- gUGCacaGGCCCUCcgaGUGGAGgcccucucacgGGGACCa -3' miRNA: 3'- aACG---CCGGGAGaacUACCUU-----------UUCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home