Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27180 | 3' | -56.5 | NC_005832.1 | + | 39741 | 1.12 | 0.001099 |
Target: 5'- gGUCCCAGGGGUCCAGACGGUUUAGCCg -3' miRNA: 3'- -CAGGGUCCCCAGGUCUGCCAAAUCGG- -5' |
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27180 | 3' | -56.5 | NC_005832.1 | + | 54958 | 0.78 | 0.216891 |
Target: 5'- cUCCCAggucguccacGGGGUCCAgGACGGUccccccgucggcccUUAGCCu -3' miRNA: 3'- cAGGGU----------CCCCAGGU-CUGCCA--------------AAUCGG- -5' |
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27180 | 3' | -56.5 | NC_005832.1 | + | 72750 | 0.75 | 0.329125 |
Target: 5'- gGUCCCAGGGGcCCAGAgGGcccuacaGGCa -3' miRNA: 3'- -CAGGGUCCCCaGGUCUgCCaaa----UCGg -5' |
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27180 | 3' | -56.5 | NC_005832.1 | + | 46056 | 0.74 | 0.368675 |
Target: 5'- -gCCCAGGGGUCCcuguccuccaGGAgGGccugAGCCg -3' miRNA: 3'- caGGGUCCCCAGG----------UCUgCCaaa-UCGG- -5' |
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27180 | 3' | -56.5 | NC_005832.1 | + | 39371 | 0.73 | 0.438402 |
Target: 5'- -gCCCAGGGGagCAGAgGGaucGGCCg -3' miRNA: 3'- caGGGUCCCCagGUCUgCCaaaUCGG- -5' |
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27180 | 3' | -56.5 | NC_005832.1 | + | 10466 | 0.73 | 0.438402 |
Target: 5'- aUCCCugcugcuGGGGUCCAG--GGUggUGGCCg -3' miRNA: 3'- cAGGGu------CCCCAGGUCugCCAa-AUCGG- -5' |
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27180 | 3' | -56.5 | NC_005832.1 | + | 72687 | 0.73 | 0.44671 |
Target: 5'- gGUCCCAGGGGUuuaggaggcccucCCGGagauaggggcGCGGacgGGCCg -3' miRNA: 3'- -CAGGGUCCCCA-------------GGUC----------UGCCaaaUCGG- -5' |
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27180 | 3' | -56.5 | NC_005832.1 | + | 103478 | 0.71 | 0.539168 |
Target: 5'- gGUCCUcGGGGUCCAGGacuacgcaacugcccCGGUcagGGUCa -3' miRNA: 3'- -CAGGGuCCCCAGGUCU---------------GCCAaa-UCGG- -5' |
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27180 | 3' | -56.5 | NC_005832.1 | + | 43813 | 0.7 | 0.607043 |
Target: 5'- -gCCCAcGGGGcCCuGcCGGUggUGGCCa -3' miRNA: 3'- caGGGU-CCCCaGGuCuGCCAa-AUCGG- -5' |
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27180 | 3' | -56.5 | NC_005832.1 | + | 43284 | 0.69 | 0.648718 |
Target: 5'- -cCCCGuGGGGUUCGuGCGGga-GGCCa -3' miRNA: 3'- caGGGU-CCCCAGGUcUGCCaaaUCGG- -5' |
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27180 | 3' | -56.5 | NC_005832.1 | + | 39341 | 0.68 | 0.687082 |
Target: 5'- gGUCCCAGGGGUuguacaccaaaaacCCGuAgGGUUUaaacuuuggaaaGGCCg -3' miRNA: 3'- -CAGGGUCCCCA--------------GGUcUgCCAAA------------UCGG- -5' |
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27180 | 3' | -56.5 | NC_005832.1 | + | 72524 | 0.68 | 0.69017 |
Target: 5'- -aCCCGGGGGUCCcuuGucgcccuuUGGUuccgUUGGCCc -3' miRNA: 3'- caGGGUCCCCAGGu--Cu-------GCCA----AAUCGG- -5' |
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27180 | 3' | -56.5 | NC_005832.1 | + | 20388 | 0.68 | 0.69017 |
Target: 5'- cUCCCAGaGGGUUCc-ACGGg--GGCCc -3' miRNA: 3'- cAGGGUC-CCCAGGucUGCCaaaUCGG- -5' |
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27180 | 3' | -56.5 | NC_005832.1 | + | 94631 | 0.68 | 0.700431 |
Target: 5'- -aCCCAGGGacgUCGGACGGUggggaaagggAGCUg -3' miRNA: 3'- caGGGUCCCca-GGUCUGCCAaa--------UCGG- -5' |
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27180 | 3' | -56.5 | NC_005832.1 | + | 67687 | 0.68 | 0.709616 |
Target: 5'- cUCuCCGGGGGUCCuGgucccaaACGGcagGGCCc -3' miRNA: 3'- cAG-GGUCCCCAGGuC-------UGCCaaaUCGG- -5' |
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27180 | 3' | -56.5 | NC_005832.1 | + | 19855 | 0.68 | 0.710633 |
Target: 5'- -cCCUGGGccugacGGUCCcccuGACGGUcUUGGCCg -3' miRNA: 3'- caGGGUCC------CCAGGu---CUGCCA-AAUCGG- -5' |
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27180 | 3' | -56.5 | NC_005832.1 | + | 71092 | 0.68 | 0.710633 |
Target: 5'- aUCCaCAGGGc-CCAGAUGGUccuGCCu -3' miRNA: 3'- cAGG-GUCCCcaGGUCUGCCAaauCGG- -5' |
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27180 | 3' | -56.5 | NC_005832.1 | + | 97294 | 0.68 | 0.720766 |
Target: 5'- -gUCCAGGGaGUCCAGGCucUUU-GCCa -3' miRNA: 3'- caGGGUCCC-CAGGUCUGccAAAuCGG- -5' |
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27180 | 3' | -56.5 | NC_005832.1 | + | 23091 | 0.67 | 0.740784 |
Target: 5'- uUCUCAGGGGUCUGGaggcuGCGGggUAcgaggugguGCCc -3' miRNA: 3'- cAGGGUCCCCAGGUC-----UGCCaaAU---------CGG- -5' |
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27180 | 3' | -56.5 | NC_005832.1 | + | 12987 | 0.67 | 0.747701 |
Target: 5'- cGUCUCGggguccgucaggcuGGGGUCCAGGCcccuGGUcuugacgAGCCu -3' miRNA: 3'- -CAGGGU--------------CCCCAGGUCUG----CCAaa-----UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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