miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27180 3' -56.5 NC_005832.1 + 39741 1.12 0.001099
Target:  5'- gGUCCCAGGGGUCCAGACGGUUUAGCCg -3'
miRNA:   3'- -CAGGGUCCCCAGGUCUGCCAAAUCGG- -5'
27180 3' -56.5 NC_005832.1 + 72257 0.66 0.824886
Target:  5'- gGUCUCAaGGGUCUAaACGGUccGGUCg -3'
miRNA:   3'- -CAGGGUcCCCAGGUcUGCCAaaUCGG- -5'
27180 3' -56.5 NC_005832.1 + 72863 0.66 0.798168
Target:  5'- -cCUCAGGGc-CCAGACGGUgcaaagGGUCc -3'
miRNA:   3'- caGGGUCCCcaGGUCUGCCAaa----UCGG- -5'
27180 3' -56.5 NC_005832.1 + 55170 0.66 0.798168
Target:  5'- aUCCCAGGGccaCAGA-GGU--GGCCa -3'
miRNA:   3'- cAGGGUCCCcagGUCUgCCAaaUCGG- -5'
27180 3' -56.5 NC_005832.1 + 72293 0.67 0.770049
Target:  5'- gGUCCCAGGGGcgaCCAGG------GGCCg -3'
miRNA:   3'- -CAGGGUCCCCa--GGUCUgccaaaUCGG- -5'
27180 3' -56.5 NC_005832.1 + 12987 0.67 0.747701
Target:  5'- cGUCUCGggguccgucaggcuGGGGUCCAGGCcccuGGUcuugacgAGCCu -3'
miRNA:   3'- -CAGGGU--------------CCCCAGGUCUG----CCAaa-----UCGG- -5'
27180 3' -56.5 NC_005832.1 + 71092 0.68 0.710633
Target:  5'- aUCCaCAGGGc-CCAGAUGGUccuGCCu -3'
miRNA:   3'- cAGG-GUCCCcaGGUCUGCCAaauCGG- -5'
27180 3' -56.5 NC_005832.1 + 20388 0.68 0.69017
Target:  5'- cUCCCAGaGGGUUCc-ACGGg--GGCCc -3'
miRNA:   3'- cAGGGUC-CCCAGGucUGCCaaaUCGG- -5'
27180 3' -56.5 NC_005832.1 + 43284 0.69 0.648718
Target:  5'- -cCCCGuGGGGUUCGuGCGGga-GGCCa -3'
miRNA:   3'- caGGGU-CCCCAGGUcUGCCaaaUCGG- -5'
27180 3' -56.5 NC_005832.1 + 72750 0.75 0.329125
Target:  5'- gGUCCCAGGGGcCCAGAgGGcccuacaGGCa -3'
miRNA:   3'- -CAGGGUCCCCaGGUCUgCCaaa----UCGg -5'
27180 3' -56.5 NC_005832.1 + 46056 0.74 0.368675
Target:  5'- -gCCCAGGGGUCCcuguccuccaGGAgGGccugAGCCg -3'
miRNA:   3'- caGGGUCCCCAGG----------UCUgCCaaa-UCGG- -5'
27180 3' -56.5 NC_005832.1 + 39371 0.73 0.438402
Target:  5'- -gCCCAGGGGagCAGAgGGaucGGCCg -3'
miRNA:   3'- caGGGUCCCCagGUCUgCCaaaUCGG- -5'
27180 3' -56.5 NC_005832.1 + 72687 0.73 0.44671
Target:  5'- gGUCCCAGGGGUuuaggaggcccucCCGGagauaggggcGCGGacgGGCCg -3'
miRNA:   3'- -CAGGGUCCCCA-------------GGUC----------UGCCaaaUCGG- -5'
27180 3' -56.5 NC_005832.1 + 103478 0.71 0.539168
Target:  5'- gGUCCUcGGGGUCCAGGacuacgcaacugcccCGGUcagGGUCa -3'
miRNA:   3'- -CAGGGuCCCCAGGUCU---------------GCCAaa-UCGG- -5'
27180 3' -56.5 NC_005832.1 + 43813 0.7 0.607043
Target:  5'- -gCCCAcGGGGcCCuGcCGGUggUGGCCa -3'
miRNA:   3'- caGGGU-CCCCaGGuCuGCCAa-AUCGG- -5'
27180 3' -56.5 NC_005832.1 + 84585 0.66 0.841803
Target:  5'- cUCCCAGGcGUCCugccguaaaacGGAgGGUgaacgUAGUCa -3'
miRNA:   3'- cAGGGUCCcCAGG-----------UCUgCCAa----AUCGG- -5'
27180 3' -56.5 NC_005832.1 + 10466 0.73 0.438402
Target:  5'- aUCCCugcugcuGGGGUCCAG--GGUggUGGCCg -3'
miRNA:   3'- cAGGGu------CCCCAGGUCugCCAa-AUCGG- -5'
27180 3' -56.5 NC_005832.1 + 39341 0.68 0.687082
Target:  5'- gGUCCCAGGGGUuguacaccaaaaacCCGuAgGGUUUaaacuuuggaaaGGCCg -3'
miRNA:   3'- -CAGGGUCCCCA--------------GGUcUgCCAAA------------UCGG- -5'
27180 3' -56.5 NC_005832.1 + 72524 0.68 0.69017
Target:  5'- -aCCCGGGGGUCCcuuGucgcccuuUGGUuccgUUGGCCc -3'
miRNA:   3'- caGGGUCCCCAGGu--Cu-------GCCA----AAUCGG- -5'
27180 3' -56.5 NC_005832.1 + 94631 0.68 0.700431
Target:  5'- -aCCCAGGGacgUCGGACGGUggggaaagggAGCUg -3'
miRNA:   3'- caGGGUCCCca-GGUCUGCCAaa--------UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.