miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27180 3' -56.5 NC_005832.1 + 2432 0.66 0.83344
Target:  5'- uGUCCCAucauGGUCCuGACGGcgUUggagacGGCCa -3'
miRNA:   3'- -CAGGGUcc--CCAGGuCUGCCa-AA------UCGG- -5'
27180 3' -56.5 NC_005832.1 + 10466 0.73 0.438402
Target:  5'- aUCCCugcugcuGGGGUCCAG--GGUggUGGCCg -3'
miRNA:   3'- cAGGGu------CCCCAGGUCugCCAa-AUCGG- -5'
27180 3' -56.5 NC_005832.1 + 12987 0.67 0.747701
Target:  5'- cGUCUCGggguccgucaggcuGGGGUCCAGGCcccuGGUcuugacgAGCCu -3'
miRNA:   3'- -CAGGGU--------------CCCCAGGUCUG----CCAaa-----UCGG- -5'
27180 3' -56.5 NC_005832.1 + 19855 0.68 0.710633
Target:  5'- -cCCUGGGccugacGGUCCcccuGACGGUcUUGGCCg -3'
miRNA:   3'- caGGGUCC------CCAGGu---CUGCCA-AAUCGG- -5'
27180 3' -56.5 NC_005832.1 + 20388 0.68 0.69017
Target:  5'- cUCCCAGaGGGUUCc-ACGGg--GGCCc -3'
miRNA:   3'- cAGGGUC-CCCAGGucUGCCaaaUCGG- -5'
27180 3' -56.5 NC_005832.1 + 23091 0.67 0.740784
Target:  5'- uUCUCAGGGGUCUGGaggcuGCGGggUAcgaggugguGCCc -3'
miRNA:   3'- cAGGGUCCCCAGGUC-----UGCCaaAU---------CGG- -5'
27180 3' -56.5 NC_005832.1 + 31445 0.66 0.807241
Target:  5'- --gUCAGGGGcuucaUCUAGACGGgccacacGGCCg -3'
miRNA:   3'- cagGGUCCCC-----AGGUCUGCCaaa----UCGG- -5'
27180 3' -56.5 NC_005832.1 + 39341 0.68 0.687082
Target:  5'- gGUCCCAGGGGUuguacaccaaaaacCCGuAgGGUUUaaacuuuggaaaGGCCg -3'
miRNA:   3'- -CAGGGUCCCCA--------------GGUcUgCCAAA------------UCGG- -5'
27180 3' -56.5 NC_005832.1 + 39371 0.73 0.438402
Target:  5'- -gCCCAGGGGagCAGAgGGaucGGCCg -3'
miRNA:   3'- caGGGUCCCCagGUCUgCCaaaUCGG- -5'
27180 3' -56.5 NC_005832.1 + 39534 0.66 0.824886
Target:  5'- uGUCaCCGGauggaccaaaGGGUCCAucUGGUUcGGCCg -3'
miRNA:   3'- -CAG-GGUC----------CCCAGGUcuGCCAAaUCGG- -5'
27180 3' -56.5 NC_005832.1 + 39703 0.66 0.815267
Target:  5'- gGUCCCcuGGGUCCuGcCGGUUccaugucucccacUGGUCc -3'
miRNA:   3'- -CAGGGucCCCAGGuCuGCCAA-------------AUCGG- -5'
27180 3' -56.5 NC_005832.1 + 39741 1.12 0.001099
Target:  5'- gGUCCCAGGGGUCCAGACGGUUUAGCCg -3'
miRNA:   3'- -CAGGGUCCCCAGGUCUGCCAAAUCGG- -5'
27180 3' -56.5 NC_005832.1 + 42041 0.67 0.770049
Target:  5'- -cCCCuuGGGGUCCGuGACuGUUaGGUCg -3'
miRNA:   3'- caGGGu-CCCCAGGU-CUGcCAAaUCGG- -5'
27180 3' -56.5 NC_005832.1 + 43284 0.69 0.648718
Target:  5'- -cCCCGuGGGGUUCGuGCGGga-GGCCa -3'
miRNA:   3'- caGGGU-CCCCAGGUcUGCCaaaUCGG- -5'
27180 3' -56.5 NC_005832.1 + 43813 0.7 0.607043
Target:  5'- -gCCCAcGGGGcCCuGcCGGUggUGGCCa -3'
miRNA:   3'- caGGGU-CCCCaGGuCuGCCAa-AUCGG- -5'
27180 3' -56.5 NC_005832.1 + 45965 0.66 0.81615
Target:  5'- -aCCgaCGGGGGUCCAGAguacaUGGCCg -3'
miRNA:   3'- caGG--GUCCCCAGGUCUgccaaAUCGG- -5'
27180 3' -56.5 NC_005832.1 + 46056 0.74 0.368675
Target:  5'- -gCCCAGGGGUCCcuguccuccaGGAgGGccugAGCCg -3'
miRNA:   3'- caGGGUCCCCAGG----------UCUgCCaaa-UCGG- -5'
27180 3' -56.5 NC_005832.1 + 49512 0.66 0.798168
Target:  5'- gGUCCgAGGaGGU-CAGGCGGgacaUGGCg -3'
miRNA:   3'- -CAGGgUCC-CCAgGUCUGCCaa--AUCGg -5'
27180 3' -56.5 NC_005832.1 + 54634 0.66 0.798168
Target:  5'- cGUCCCucuuGGGGUUCu--CGGacugGGCCu -3'
miRNA:   3'- -CAGGGu---CCCCAGGucuGCCaaa-UCGG- -5'
27180 3' -56.5 NC_005832.1 + 54958 0.78 0.216891
Target:  5'- cUCCCAggucguccacGGGGUCCAgGACGGUccccccgucggcccUUAGCCu -3'
miRNA:   3'- cAGGGU----------CCCCAGGU-CUGCCA--------------AAUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.