miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27225 5' -62.2 NC_005832.1 + 88147 1.08 0.000535
Target:  5'- gAGAGGACCCUGGCCAGGCUCCUGGACc -3'
miRNA:   3'- -UCUCCUGGGACCGGUCCGAGGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 95379 0.81 0.055922
Target:  5'- cGGGGACCCUGGCC--GCUCC-GGACa -3'
miRNA:   3'- uCUCCUGGGACCGGucCGAGGaCCUG- -5'
27225 5' -62.2 NC_005832.1 + 54073 0.77 0.103051
Target:  5'- uGGAgGGACUCUgcGGCCAGGUUCCUuccGGACu -3'
miRNA:   3'- -UCU-CCUGGGA--CCGGUCCGAGGA---CCUG- -5'
27225 5' -62.2 NC_005832.1 + 9278 0.75 0.148044
Target:  5'- cAGAGGACCCuggugcacaucgUGGCCAGGCUCaugaagauuGACg -3'
miRNA:   3'- -UCUCCUGGG------------ACCGGUCCGAGgac------CUG- -5'
27225 5' -62.2 NC_005832.1 + 88276 0.74 0.155777
Target:  5'- -cAGGAgCCUGGCCAGGgUCCUcucGGAg -3'
miRNA:   3'- ucUCCUgGGACCGGUCCgAGGA---CCUg -5'
27225 5' -62.2 NC_005832.1 + 47558 0.73 0.190471
Target:  5'- --uGGACUUugUGGCCGGgacGCUCCUGGGCa -3'
miRNA:   3'- ucuCCUGGG--ACCGGUC---CGAGGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 94817 0.73 0.195257
Target:  5'- gGGAGGACCCUGuCUAGGCUaaagUCUGcGGCc -3'
miRNA:   3'- -UCUCCUGGGACcGGUCCGA----GGAC-CUG- -5'
27225 5' -62.2 NC_005832.1 + 6617 0.72 0.215463
Target:  5'- aGGGGGACauguuuaaCCUGacgcagauaGCgGGGCUCCUGGGCc -3'
miRNA:   3'- -UCUCCUG--------GGAC---------CGgUCCGAGGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 11802 0.72 0.220787
Target:  5'- aAGGGugaaggugcccuGGCUCUGGCCGGGCUCCUcGuGAUg -3'
miRNA:   3'- -UCUC------------CUGGGACCGGUCCGAGGA-C-CUG- -5'
27225 5' -62.2 NC_005832.1 + 32426 0.71 0.243213
Target:  5'- cGGGGACCCUGGacagcgagugucCCGuggcgacuGGCUCCgGGGCc -3'
miRNA:   3'- uCUCCUGGGACC------------GGU--------CCGAGGaCCUG- -5'
27225 5' -62.2 NC_005832.1 + 78867 0.71 0.251498
Target:  5'- cGGAGGACUUUgcGGCCAGGgUggcagagucccugagCCUGGACc -3'
miRNA:   3'- -UCUCCUGGGA--CCGGUCCgA---------------GGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 36020 0.71 0.254513
Target:  5'- --cGGGCCCUcagGGCCAGaGCUCCUacgcgugGGAUg -3'
miRNA:   3'- ucuCCUGGGA---CCGGUC-CGAGGA-------CCUG- -5'
27225 5' -62.2 NC_005832.1 + 67023 0.71 0.25512
Target:  5'- cGAGGGCCCUGGCgGcGGCcguggCgaGGGCc -3'
miRNA:   3'- uCUCCUGGGACCGgU-CCGa----GgaCCUG- -5'
27225 5' -62.2 NC_005832.1 + 67623 0.71 0.267501
Target:  5'- cAGAGG-CCCUgGGUCAGggaGCUCCcuUGGACc -3'
miRNA:   3'- -UCUCCuGGGA-CCGGUC---CGAGG--ACCUG- -5'
27225 5' -62.2 NC_005832.1 + 53947 0.71 0.273872
Target:  5'- -cAGGACCCUGGaaccCCAGGCgaaggGGACg -3'
miRNA:   3'- ucUCCUGGGACC----GGUCCGagga-CCUG- -5'
27225 5' -62.2 NC_005832.1 + 87495 0.71 0.273872
Target:  5'- cGAGGACCagggcagcgucCUccaggcuggcGGCCauguaccacgacGGGCUCCUGGACu -3'
miRNA:   3'- uCUCCUGG-----------GA----------CCGG------------UCCGAGGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 75917 0.7 0.306848
Target:  5'- -cAGGGCCCUGGCCaaggagaggggagAGGCaCC-GGACc -3'
miRNA:   3'- ucUCCUGGGACCGG-------------UCCGaGGaCCUG- -5'
27225 5' -62.2 NC_005832.1 + 95512 0.7 0.314656
Target:  5'- cGAGGugUCcggagcGGCCAGGgUCCccgGGACa -3'
miRNA:   3'- uCUCCugGGa-----CCGGUCCgAGGa--CCUG- -5'
27225 5' -62.2 NC_005832.1 + 102075 0.69 0.321884
Target:  5'- ---uGGCCUUGGCCAGGg-UCUGGGCg -3'
miRNA:   3'- ucucCUGGGACCGGUCCgaGGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 46101 0.69 0.352027
Target:  5'- -uAGGcuuUCCUGGCCAGGCcagaguugucccUCCUGGcCa -3'
miRNA:   3'- ucUCCu--GGGACCGGUCCG------------AGGACCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.