miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27225 5' -62.2 NC_005832.1 + 101900 0.68 0.409424
Target:  5'- aAGAGGcGCaggGGCCAGGUUUUUGGAg -3'
miRNA:   3'- -UCUCC-UGggaCCGGUCCGAGGACCUg -5'
27225 5' -62.2 NC_005832.1 + 87255 0.69 0.359869
Target:  5'- uGAGGGCCaUGGUCaAGGCgUCUGGAa -3'
miRNA:   3'- uCUCCUGGgACCGG-UCCGaGGACCUg -5'
27225 5' -62.2 NC_005832.1 + 4991 0.68 0.367832
Target:  5'- -aGGGACUCugacgUGGaCAGGgUCCUGGGCa -3'
miRNA:   3'- ucUCCUGGG-----ACCgGUCCgAGGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 63998 0.68 0.367832
Target:  5'- uGAGGGCCCUGauaCCcGGCUCCcugaugucUGGAa -3'
miRNA:   3'- uCUCCUGGGACc--GGuCCGAGG--------ACCUg -5'
27225 5' -62.2 NC_005832.1 + 11375 0.68 0.367832
Target:  5'- uGAGGAgcgccgcucCCCUGGCCAGGaCUaugcagccUCUGGuCa -3'
miRNA:   3'- uCUCCU---------GGGACCGGUCC-GA--------GGACCuG- -5'
27225 5' -62.2 NC_005832.1 + 36054 0.68 0.367832
Target:  5'- cGAGGGgUg-GGCCGGGUggacgcUCCUGGGCu -3'
miRNA:   3'- uCUCCUgGgaCCGGUCCG------AGGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 66604 0.68 0.384117
Target:  5'- uGAGG-UCCUGGCUggAGGacucgagggCCUGGACg -3'
miRNA:   3'- uCUCCuGGGACCGG--UCCga-------GGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 27861 0.68 0.409424
Target:  5'- aGGAGGcGgCC-GGgCAGGC-CCUGGACc -3'
miRNA:   3'- -UCUCC-UgGGaCCgGUCCGaGGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 87573 0.68 0.409424
Target:  5'- --uGGugCCUccGGaCCaaAGGCUCCUGGAg -3'
miRNA:   3'- ucuCCugGGA--CC-GG--UCCGAGGACCUg -5'
27225 5' -62.2 NC_005832.1 + 46101 0.69 0.352027
Target:  5'- -uAGGcuuUCCUGGCCAGGCcagaguugucccUCCUGGcCa -3'
miRNA:   3'- ucUCCu--GGGACCGGUCCG------------AGGACCuG- -5'
27225 5' -62.2 NC_005832.1 + 75917 0.7 0.306848
Target:  5'- -cAGGGCCCUGGCCaaggagaggggagAGGCaCC-GGACc -3'
miRNA:   3'- ucUCCUGGGACCGG-------------UCCGaGGaCCUG- -5'
27225 5' -62.2 NC_005832.1 + 87495 0.71 0.273872
Target:  5'- cGAGGACCagggcagcgucCUccaggcuggcGGCCauguaccacgacGGGCUCCUGGACu -3'
miRNA:   3'- uCUCCUGG-----------GA----------CCGG------------UCCGAGGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 95379 0.81 0.055922
Target:  5'- cGGGGACCCUGGCC--GCUCC-GGACa -3'
miRNA:   3'- uCUCCUGGGACCGGucCGAGGaCCUG- -5'
27225 5' -62.2 NC_005832.1 + 54073 0.77 0.103051
Target:  5'- uGGAgGGACUCUgcGGCCAGGUUCCUuccGGACu -3'
miRNA:   3'- -UCU-CCUGGGA--CCGGUCCGAGGA---CCUG- -5'
27225 5' -62.2 NC_005832.1 + 94817 0.73 0.195257
Target:  5'- gGGAGGACCCUGuCUAGGCUaaagUCUGcGGCc -3'
miRNA:   3'- -UCUCCUGGGACcGGUCCGA----GGAC-CUG- -5'
27225 5' -62.2 NC_005832.1 + 6617 0.72 0.215463
Target:  5'- aGGGGGACauguuuaaCCUGacgcagauaGCgGGGCUCCUGGGCc -3'
miRNA:   3'- -UCUCCUG--------GGAC---------CGgUCCGAGGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 11802 0.72 0.220787
Target:  5'- aAGGGugaaggugcccuGGCUCUGGCCGGGCUCCUcGuGAUg -3'
miRNA:   3'- -UCUC------------CUGGGACCGGUCCGAGGA-C-CUG- -5'
27225 5' -62.2 NC_005832.1 + 78867 0.71 0.251498
Target:  5'- cGGAGGACUUUgcGGCCAGGgUggcagagucccugagCCUGGACc -3'
miRNA:   3'- -UCUCCUGGGA--CCGGUCCgA---------------GGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 67023 0.71 0.25512
Target:  5'- cGAGGGCCCUGGCgGcGGCcguggCgaGGGCc -3'
miRNA:   3'- uCUCCUGGGACCGgU-CCGa----GgaCCUG- -5'
27225 5' -62.2 NC_005832.1 + 67623 0.71 0.267501
Target:  5'- cAGAGG-CCCUgGGUCAGggaGCUCCcuUGGACc -3'
miRNA:   3'- -UCUCCuGGGA-CCGGUC---CGAGG--ACCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.