miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27225 5' -62.2 NC_005832.1 + 4991 0.68 0.367832
Target:  5'- -aGGGACUCugacgUGGaCAGGgUCCUGGGCa -3'
miRNA:   3'- ucUCCUGGG-----ACCgGUCCgAGGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 6617 0.72 0.215463
Target:  5'- aGGGGGACauguuuaaCCUGacgcagauaGCgGGGCUCCUGGGCc -3'
miRNA:   3'- -UCUCCUG--------GGAC---------CGgUCCGAGGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 7516 0.66 0.523968
Target:  5'- uGAGGGaCCUGGUggggugcucguucguCAGGagggacCUCCUGGACc -3'
miRNA:   3'- uCUCCUgGGACCG---------------GUCC------GAGGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 9278 0.75 0.148044
Target:  5'- cAGAGGACCCuggugcacaucgUGGCCAGGCUCaugaagauuGACg -3'
miRNA:   3'- -UCUCCUGGG------------ACCGGUCCGAGgac------CUG- -5'
27225 5' -62.2 NC_005832.1 + 9925 0.66 0.520062
Target:  5'- aAGcGGGCaggGGaCCGGGCUCCacGGACa -3'
miRNA:   3'- -UCuCCUGggaCC-GGUCCGAGGa-CCUG- -5'
27225 5' -62.2 NC_005832.1 + 10746 0.66 0.491155
Target:  5'- aGGAGGA---UGGCCGGGCagaaCCUGGcCg -3'
miRNA:   3'- -UCUCCUgggACCGGUCCGa---GGACCuG- -5'
27225 5' -62.2 NC_005832.1 + 11375 0.68 0.367832
Target:  5'- uGAGGAgcgccgcucCCCUGGCCAGGaCUaugcagccUCUGGuCa -3'
miRNA:   3'- uCUCCU---------GGGACCGGUCC-GA--------GGACCuG- -5'
27225 5' -62.2 NC_005832.1 + 11802 0.72 0.220787
Target:  5'- aAGGGugaaggugcccuGGCUCUGGCCGGGCUCCUcGuGAUg -3'
miRNA:   3'- -UCUC------------CUGGGACCGGUCCGAGGA-C-CUG- -5'
27225 5' -62.2 NC_005832.1 + 27861 0.68 0.409424
Target:  5'- aGGAGGcGgCC-GGgCAGGC-CCUGGACc -3'
miRNA:   3'- -UCUCC-UgGGaCCgGUCCGaGGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 28041 0.68 0.418088
Target:  5'- uGGGGGuACCgUGGCuCAGGC-CCUGucCa -3'
miRNA:   3'- -UCUCC-UGGgACCG-GUCCGaGGACcuG- -5'
27225 5' -62.2 NC_005832.1 + 29128 0.68 0.384117
Target:  5'- cGAGGGCUCUGacggaacCCAGGCUUagCUGGAa -3'
miRNA:   3'- uCUCCUGGGACc------GGUCCGAG--GACCUg -5'
27225 5' -62.2 NC_005832.1 + 31005 0.67 0.444733
Target:  5'- --cGGACCCUGGgaaaggaaAGGUUCC-GGACa -3'
miRNA:   3'- ucuCCUGGGACCgg------UCCGAGGaCCUG- -5'
27225 5' -62.2 NC_005832.1 + 32326 0.66 0.520062
Target:  5'- aGGGGGAUCCUuG-UGGGCUCC-GGACc -3'
miRNA:   3'- -UCUCCUGGGAcCgGUCCGAGGaCCUG- -5'
27225 5' -62.2 NC_005832.1 + 32426 0.71 0.243213
Target:  5'- cGGGGACCCUGGacagcgagugucCCGuggcgacuGGCUCCgGGGCc -3'
miRNA:   3'- uCUCCUGGGACC------------GGU--------CCGAGGaCCUG- -5'
27225 5' -62.2 NC_005832.1 + 36020 0.71 0.254513
Target:  5'- --cGGGCCCUcagGGCCAGaGCUCCUacgcgugGGAUg -3'
miRNA:   3'- ucuCCUGGGA---CCGGUC-CGAGGA-------CCUG- -5'
27225 5' -62.2 NC_005832.1 + 36054 0.68 0.367832
Target:  5'- cGAGGGgUg-GGCCGGGUggacgcUCCUGGGCu -3'
miRNA:   3'- uCUCCUgGgaCCGGUCCG------AGGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 36265 0.67 0.462092
Target:  5'- gAGAGGACCCUcGCgGcGGCcUCUgcgacuaUGGACg -3'
miRNA:   3'- -UCUCCUGGGAcCGgU-CCG-AGG-------ACCUG- -5'
27225 5' -62.2 NC_005832.1 + 41544 0.66 0.520062
Target:  5'- gGGAGGcGCCCUcGGUaguCAuGCcCCUGGACa -3'
miRNA:   3'- -UCUCC-UGGGA-CCG---GUcCGaGGACCUG- -5'
27225 5' -62.2 NC_005832.1 + 43174 0.67 0.472304
Target:  5'- -aAGGGCCU--GCCGGGCUUCUuugaGGGCg -3'
miRNA:   3'- ucUCCUGGGacCGGUCCGAGGA----CCUG- -5'
27225 5' -62.2 NC_005832.1 + 46101 0.69 0.352027
Target:  5'- -uAGGcuuUCCUGGCCAGGCcagaguugucccUCCUGGcCa -3'
miRNA:   3'- ucUCCu--GGGACCGGUCCG------------AGGACCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.