miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27228 3' -56.9 NC_005832.1 + 90161 1.09 0.00116
Target:  5'- aAUGCCAAGAGCUUGGCCACUGGACCCu -3'
miRNA:   3'- -UACGGUUCUCGAACCGGUGACCUGGG- -5'
27228 3' -56.9 NC_005832.1 + 81299 0.73 0.354936
Target:  5'- -gGCCAAGAGC--GGCUACUGu-CCCg -3'
miRNA:   3'- uaCGGUUCUCGaaCCGGUGACcuGGG- -5'
27228 3' -56.9 NC_005832.1 + 36008 0.73 0.379963
Target:  5'- aGUGCCuaGAGGGCcugacGGCCgaGCUGGugCCg -3'
miRNA:   3'- -UACGG--UUCUCGaa---CCGG--UGACCugGG- -5'
27228 3' -56.9 NC_005832.1 + 11332 0.72 0.406144
Target:  5'- -cGCCAAGAGCgUGGCCACcaugagcgcgGaGGCCa -3'
miRNA:   3'- uaCGGUUCUCGaACCGGUGa---------C-CUGGg -5'
27228 3' -56.9 NC_005832.1 + 35887 0.72 0.43343
Target:  5'- -cGCgUAGGAGCUcUGGCC-CUgaGGGCCCg -3'
miRNA:   3'- uaCG-GUUCUCGA-ACCGGuGA--CCUGGG- -5'
27228 3' -56.9 NC_005832.1 + 72886 0.71 0.442759
Target:  5'- uUGCCuguAGGGCccucugGGCCcCUGGgACCCg -3'
miRNA:   3'- uACGGu--UCUCGaa----CCGGuGACC-UGGG- -5'
27228 3' -56.9 NC_005832.1 + 31394 0.71 0.452201
Target:  5'- -cGCCucucuacacuGAGCggUGGCgCACUGGGCCa -3'
miRNA:   3'- uaCGGuu--------CUCGa-ACCG-GUGACCUGGg -5'
27228 3' -56.9 NC_005832.1 + 5353 0.71 0.452201
Target:  5'- -aGCCu-GAGCUgGGCCACcaGACCCu -3'
miRNA:   3'- uaCGGuuCUCGAaCCGGUGacCUGGG- -5'
27228 3' -56.9 NC_005832.1 + 96906 0.71 0.471408
Target:  5'- -cGCCAcagAGGGCaaGGCUAUgagGGACCUg -3'
miRNA:   3'- uaCGGU---UCUCGaaCCGGUGa--CCUGGG- -5'
27228 3' -56.9 NC_005832.1 + 4990 0.7 0.500966
Target:  5'- -aGCCucacGAGC--GGCCuCUGGGCCCc -3'
miRNA:   3'- uaCGGuu--CUCGaaCCGGuGACCUGGG- -5'
27228 3' -56.9 NC_005832.1 + 69848 0.7 0.521119
Target:  5'- -gGCUuGGAGUUUGGCUGCUGGAg-- -3'
miRNA:   3'- uaCGGuUCUCGAACCGGUGACCUggg -5'
27228 3' -56.9 NC_005832.1 + 70064 0.7 0.521119
Target:  5'- -gGCUuGGAGUUUGGCUGCUGGAg-- -3'
miRNA:   3'- uaCGGuUCUCGAACCGGUGACCUggg -5'
27228 3' -56.9 NC_005832.1 + 51844 0.7 0.531313
Target:  5'- gAUGaCCGuggacccGAGCUUGGgCAC-GGACCCc -3'
miRNA:   3'- -UAC-GGUu------CUCGAACCgGUGaCCUGGG- -5'
27228 3' -56.9 NC_005832.1 + 79696 0.69 0.55191
Target:  5'- -gGCCuuguugGGGAGCaggUUGGCC-CUGaGGCCCg -3'
miRNA:   3'- uaCGG------UUCUCG---AACCGGuGAC-CUGGG- -5'
27228 3' -56.9 NC_005832.1 + 12583 0.69 0.562299
Target:  5'- -gGCCuugauGAGCUUGagggccGUCACUGGuCCCa -3'
miRNA:   3'- uaCGGuu---CUCGAAC------CGGUGACCuGGG- -5'
27228 3' -56.9 NC_005832.1 + 4952 0.69 0.562299
Target:  5'- gAUGCCucccGAGCUcauccUGGCCACcuUGGACa- -3'
miRNA:   3'- -UACGGuu--CUCGA-----ACCGGUG--ACCUGgg -5'
27228 3' -56.9 NC_005832.1 + 54791 0.69 0.569604
Target:  5'- aGUGCCuGGgcaGGCUaagGGCCGacggggggaccgucCUGGACCCc -3'
miRNA:   3'- -UACGGuUC---UCGAa--CCGGU--------------GACCUGGG- -5'
27228 3' -56.9 NC_005832.1 + 75095 0.69 0.580078
Target:  5'- cUGUCAugggaggaGGAGUggcgGGCCACUgggacgacgugaggGGACCCa -3'
miRNA:   3'- uACGGU--------UCUCGaa--CCGGUGA--------------CCUGGG- -5'
27228 3' -56.9 NC_005832.1 + 7473 0.69 0.582178
Target:  5'- cUGCUggGucuGCUUGGCUccuauggACUGGGCgCa -3'
miRNA:   3'- uACGGuuCu--CGAACCGG-------UGACCUGgG- -5'
27228 3' -56.9 NC_005832.1 + 56608 0.69 0.583229
Target:  5'- gAUGCCAAG-GCcucgGGCC--UGGACCUc -3'
miRNA:   3'- -UACGGUUCuCGaa--CCGGugACCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.