Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27228 | 3' | -56.9 | NC_005832.1 | + | 649 | 0.68 | 0.636073 |
Target: 5'- -cGCCGGGGGCUggugcagaaagUGGuacucggcCCACagGGGCCCc -3' miRNA: 3'- uaCGGUUCUCGA-----------ACC--------GGUGa-CCUGGG- -5' |
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27228 | 3' | -56.9 | NC_005832.1 | + | 4952 | 0.69 | 0.562299 |
Target: 5'- gAUGCCucccGAGCUcauccUGGCCACcuUGGACa- -3' miRNA: 3'- -UACGGuu--CUCGA-----ACCGGUG--ACCUGgg -5' |
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27228 | 3' | -56.9 | NC_005832.1 | + | 4990 | 0.7 | 0.500966 |
Target: 5'- -aGCCucacGAGC--GGCCuCUGGGCCCc -3' miRNA: 3'- uaCGGuu--CUCGaaCCGGuGACCUGGG- -5' |
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27228 | 3' | -56.9 | NC_005832.1 | + | 5353 | 0.71 | 0.452201 |
Target: 5'- -aGCCu-GAGCUgGGCCACcaGACCCu -3' miRNA: 3'- uaCGGuuCUCGAaCCGGUGacCUGGG- -5' |
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27228 | 3' | -56.9 | NC_005832.1 | + | 7473 | 0.69 | 0.582178 |
Target: 5'- cUGCUggGucuGCUUGGCUccuauggACUGGGCgCa -3' miRNA: 3'- uACGGuuCu--CGAACCGG-------UGACCUGgG- -5' |
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27228 | 3' | -56.9 | NC_005832.1 | + | 7548 | 0.67 | 0.719941 |
Target: 5'- -gGcCCAGGAGCUccccgaGGgCAC-GGACCCc -3' miRNA: 3'- uaC-GGUUCUCGAa-----CCgGUGaCCUGGG- -5' |
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27228 | 3' | -56.9 | NC_005832.1 | + | 10318 | 0.67 | 0.678334 |
Target: 5'- -cGUCAAGccCUcGGCCACcacccUGGACCCc -3' miRNA: 3'- uaCGGUUCucGAaCCGGUG-----ACCUGGG- -5' |
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27228 | 3' | -56.9 | NC_005832.1 | + | 11332 | 0.72 | 0.406144 |
Target: 5'- -cGCCAAGAGCgUGGCCACcaugagcgcgGaGGCCa -3' miRNA: 3'- uaCGGUUCUCGaACCGGUGa---------C-CUGGg -5' |
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27228 | 3' | -56.9 | NC_005832.1 | + | 12583 | 0.69 | 0.562299 |
Target: 5'- -gGCCuugauGAGCUUGagggccGUCACUGGuCCCa -3' miRNA: 3'- uaCGGuu---CUCGAAC------CGGUGACCuGGG- -5' |
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27228 | 3' | -56.9 | NC_005832.1 | + | 18254 | 0.67 | 0.678334 |
Target: 5'- -cGCgAAG-GUgagGGCCAgUGGACUCa -3' miRNA: 3'- uaCGgUUCuCGaa-CCGGUgACCUGGG- -5' |
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27228 | 3' | -56.9 | NC_005832.1 | + | 24384 | 0.68 | 0.657247 |
Target: 5'- cUGCCAuGAuCUUGgaGCUAUUGGACCUg -3' miRNA: 3'- uACGGUuCUcGAAC--CGGUGACCUGGG- -5' |
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27228 | 3' | -56.9 | NC_005832.1 | + | 27646 | 0.66 | 0.760257 |
Target: 5'- -gGUCGAGGGgUUaacGGgCACgGGGCCCg -3' miRNA: 3'- uaCGGUUCUCgAA---CCgGUGaCCUGGG- -5' |
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27228 | 3' | -56.9 | NC_005832.1 | + | 31394 | 0.71 | 0.452201 |
Target: 5'- -cGCCucucuacacuGAGCggUGGCgCACUGGGCCa -3' miRNA: 3'- uaCGGuu--------CUCGa-ACCG-GUGACCUGGg -5' |
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27228 | 3' | -56.9 | NC_005832.1 | + | 31446 | 0.68 | 0.657247 |
Target: 5'- -aGUCAGGGGCUUcaucuagacgGGCCACacGGccGCCCu -3' miRNA: 3'- uaCGGUUCUCGAA----------CCGGUGa-CC--UGGG- -5' |
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27228 | 3' | -56.9 | NC_005832.1 | + | 32934 | 0.66 | 0.770057 |
Target: 5'- cUGUCAgcgGGAGCgaGGCCcaucaggaACUGGACggCCa -3' miRNA: 3'- uACGGU---UCUCGaaCCGG--------UGACCUG--GG- -5' |
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27228 | 3' | -56.9 | NC_005832.1 | + | 35887 | 0.72 | 0.43343 |
Target: 5'- -cGCgUAGGAGCUcUGGCC-CUgaGGGCCCg -3' miRNA: 3'- uaCG-GUUCUCGA-ACCGGuGA--CCUGGG- -5' |
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27228 | 3' | -56.9 | NC_005832.1 | + | 36008 | 0.73 | 0.379963 |
Target: 5'- aGUGCCuaGAGGGCcugacGGCCgaGCUGGugCCg -3' miRNA: 3'- -UACGG--UUCUCGaa---CCGG--UGACCugGG- -5' |
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27228 | 3' | -56.9 | NC_005832.1 | + | 36531 | 0.66 | 0.760257 |
Target: 5'- -cGCCAGG-GCcgggGGCCACaGGGCg- -3' miRNA: 3'- uaCGGUUCuCGaa--CCGGUGaCCUGgg -5' |
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27228 | 3' | -56.9 | NC_005832.1 | + | 39500 | 0.67 | 0.709635 |
Target: 5'- -gGCCGAucccucuGCUccccugGGCCcCUGGGCCCu -3' miRNA: 3'- uaCGGUUcu-----CGAa-----CCGGuGACCUGGG- -5' |
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27228 | 3' | -56.9 | NC_005832.1 | + | 42697 | 0.68 | 0.667806 |
Target: 5'- -gGCCAacaAGAGggUGgacGCCACcGGGCCCc -3' miRNA: 3'- uaCGGU---UCUCgaAC---CGGUGaCCUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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