miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27228 3' -56.9 NC_005832.1 + 36531 0.66 0.760257
Target:  5'- -cGCCAGG-GCcgggGGCCACaGGGCg- -3'
miRNA:   3'- uaCGGUUCuCGaa--CCGGUGaCCUGgg -5'
27228 3' -56.9 NC_005832.1 + 43373 0.68 0.625476
Target:  5'- gGUGCCAGGgaaGGUUcgugaggaGGgUGCUGGACCCa -3'
miRNA:   3'- -UACGGUUC---UCGAa-------CCgGUGACCUGGG- -5'
27228 3' -56.9 NC_005832.1 + 96668 0.68 0.625476
Target:  5'- uGUGUCcAGGGCUUGGCCGaggaGGCCg -3'
miRNA:   3'- -UACGGuUCUCGAACCGGUgac-CUGGg -5'
27228 3' -56.9 NC_005832.1 + 65175 0.68 0.646666
Target:  5'- -gGCCAgGGAGCUucagGGCUAC-GG-CCCg -3'
miRNA:   3'- uaCGGU-UCUCGAa---CCGGUGaCCuGGG- -5'
27228 3' -56.9 NC_005832.1 + 42697 0.68 0.667806
Target:  5'- -gGCCAacaAGAGggUGgacGCCACcGGGCCCc -3'
miRNA:   3'- uaCGGU---UCUCgaAC---CGGUGaCCUGGG- -5'
27228 3' -56.9 NC_005832.1 + 10318 0.67 0.678334
Target:  5'- -cGUCAAGccCUcGGCCACcacccUGGACCCc -3'
miRNA:   3'- uaCGGUUCucGAaCCGGUG-----ACCUGGG- -5'
27228 3' -56.9 NC_005832.1 + 79881 0.67 0.688822
Target:  5'- -gGCCGaggagAGGGCggccaUGGCCuc-GGACCCu -3'
miRNA:   3'- uaCGGU-----UCUCGa----ACCGGugaCCUGGG- -5'
27228 3' -56.9 NC_005832.1 + 52202 0.67 0.719941
Target:  5'- -gGaCCAGGAGCUUGcacauguuuGCCACggccaGGAgCCa -3'
miRNA:   3'- uaC-GGUUCUCGAAC---------CGGUGa----CCUgGG- -5'
27228 3' -56.9 NC_005832.1 + 45810 0.66 0.760257
Target:  5'- -aGCCAucaccAGCUUguagaggacGGCCAuguacuCUGGACCCc -3'
miRNA:   3'- uaCGGUuc---UCGAA---------CCGGU------GACCUGGG- -5'
27228 3' -56.9 NC_005832.1 + 80811 0.68 0.61171
Target:  5'- -cGUCAGGAGCUUcgcugcaaacagggGGUCGCggugucccccgGGGCCCu -3'
miRNA:   3'- uaCGGUUCUCGAA--------------CCGGUGa----------CCUGGG- -5'
27228 3' -56.9 NC_005832.1 + 75095 0.69 0.580078
Target:  5'- cUGUCAugggaggaGGAGUggcgGGCCACUgggacgacgugaggGGACCCa -3'
miRNA:   3'- uACGGU--------UCUCGaa--CCGGUGA--------------CCUGGG- -5'
27228 3' -56.9 NC_005832.1 + 54791 0.69 0.569604
Target:  5'- aGUGCCuGGgcaGGCUaagGGCCGacggggggaccgucCUGGACCCc -3'
miRNA:   3'- -UACGGuUC---UCGAa--CCGGU--------------GACCUGGG- -5'
27228 3' -56.9 NC_005832.1 + 81299 0.73 0.354936
Target:  5'- -gGCCAAGAGC--GGCUACUGu-CCCg -3'
miRNA:   3'- uaCGGUUCUCGaaCCGGUGACcuGGG- -5'
27228 3' -56.9 NC_005832.1 + 36008 0.73 0.379963
Target:  5'- aGUGCCuaGAGGGCcugacGGCCgaGCUGGugCCg -3'
miRNA:   3'- -UACGG--UUCUCGaa---CCGG--UGACCugGG- -5'
27228 3' -56.9 NC_005832.1 + 35887 0.72 0.43343
Target:  5'- -cGCgUAGGAGCUcUGGCC-CUgaGGGCCCg -3'
miRNA:   3'- uaCG-GUUCUCGA-ACCGGuGA--CCUGGG- -5'
27228 3' -56.9 NC_005832.1 + 31394 0.71 0.452201
Target:  5'- -cGCCucucuacacuGAGCggUGGCgCACUGGGCCa -3'
miRNA:   3'- uaCGGuu--------CUCGa-ACCG-GUGACCUGGg -5'
27228 3' -56.9 NC_005832.1 + 96906 0.71 0.471408
Target:  5'- -cGCCAcagAGGGCaaGGCUAUgagGGACCUg -3'
miRNA:   3'- uaCGGU---UCUCGaaCCGGUGa--CCUGGG- -5'
27228 3' -56.9 NC_005832.1 + 51844 0.7 0.531313
Target:  5'- gAUGaCCGuggacccGAGCUUGGgCAC-GGACCCc -3'
miRNA:   3'- -UAC-GGUu------CUCGAACCgGUGaCCUGGG- -5'
27228 3' -56.9 NC_005832.1 + 4952 0.69 0.562299
Target:  5'- gAUGCCucccGAGCUcauccUGGCCACcuUGGACa- -3'
miRNA:   3'- -UACGGuu--CUCGA-----ACCGGUG--ACCUGgg -5'
27228 3' -56.9 NC_005832.1 + 12583 0.69 0.562299
Target:  5'- -gGCCuugauGAGCUUGagggccGUCACUGGuCCCa -3'
miRNA:   3'- uaCGGuu---CUCGAAC------CGGUGACCuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.